YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hsd-2
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHYVIVGGG GFLGAHVISA LQKIGCKERI IVVDPCPQEF KTIKIDKSNI SYIKASFLDD  60
   61 KVLENILNGA SAVVHLAAVG HTGLIAGDRK SVHNFNVNGT KQLIKQCKAL GVKRFLYASS 120
  121 VAVSFIGEPL DNVTEDDPLP DPKKYLDFYS ASKAEAETYV LSQSTPDFKT VCLRFRGIYG 180
  181 PEDPNVTLKV ANLIKNGLFI GMVSAHGRES VSCASSGVNC AKAFALADQM LQNPDGLHGR 240
  241 AYYILDGENV GQFQFWTPLV LALGKQPPSF YTPYDFIKAV VPYFQNVCYG VFKLPPLLTK 300
  301 FELSILAVDN TYSIERARRE LGYEPEPCVM TDVAKYYQDL EENEVATATT EWKSAISILI 360
  361 VFISIAFLFL FNLN

Type	Start	End	Confidence
Non-Cytoplasmic	1	351	0.64
Transmembrane Helix	352	373	0.82
Cytoplasmic	374	374	0.59