YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06413
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYESTSFDQ SIATNDTDQE CAYSEPVYVK ERFWMVAIFG TAVCIINILE NTFLSFMLFK  60
   61 KKSYRSSHML YLALLAFFDV WMALAYIPLM SLNLFVDYYK SVVLLRAWFA YMLPMITVSH 120
  121 IAMTASSFLM VAASLERYVI TCHPTKNRWL SRNRMWIAAF AIFLGTTCKF SQLYEMEIEY 180
  181 LPQCMGTMRE YQLNLSALAR YEIYGYWRVH FRTIVTILIP FFSLAFINIR IVLVLSKNEF 240
  241 KFLHSTKLSD AKRKSAVRNA TRTMVFIVFT YLLSNVLNVI IIIWEYIDMD MLTQQFETFY 300
  301 MFAVDVVSLS TIIFGALRLP IYVICQANLR KEFFAQLKTM LSLNSYTGFL SSSTKNMTIE 360
  361 DMDIDRRTPD ISGDGTVLIV ESDQKKDSSA TCTVIRKNSL HRMNGGFSDM SEKRFKQFLN 420
  421 KYNSKLEKIL IENQFIRPSD NPLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.95
Transmembrane Helix	33	56	0.84
Cytoplasmic	57	68	0.83
Transmembrane Helix	69	89	0.93
Non-Cytoplasmic	90	109	0.88
Transmembrane Helix	110	133	0.86
Cytoplasmic	134	153	0.87
Transmembrane Helix	154	173	0.93
Non-Cytoplasmic	174	212	0.95
Transmembrane Helix	213	234	0.91
Cytoplasmic	235	262	0.96
Transmembrane Helix	263	284	0.94
Non-Cytoplasmic	285	300	0.86
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	444	0.95