YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	imp-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAATEIPP TASNVTVFTF EEQATSSLAL YGMSILCIII GSIRSAQYIR TNIDKKRLIE  60
   61 GSITMREARK FPISASLVLF GLYLFFKPAA ERFLWVARVF QILRVPEEYV QKINSTIISY 120
  121 TANTTTTGPS EPFLLRLASR IPQERVPEAI QNAATYAYTN LPTIQKAECM QLLTFLICFE 180
  181 GVNAFASLLK PFVTAFLKKM PLVPSFLRFN APYLFSLKKG NKEMEEGDIE DAKKKETEYL 240
  241 FKIDFDRYDI IALLMCSPIL ISHLLKRHWI TNNIIGVSFS ILGIERLHLA SFKAGSLLLV 300
  301 GLFFYDIFWV FGTDVMTSVA KGIDAPILLQ FPQDIYRNGI MEASKHSMLG LGDIVIPGIF 360
  361 IALLRRFDYR VVQTTAESKA PQGSLKGRYY FVVTVVAYMA GLFITMAVMH HFKAAQPALL 420
  421 YLVPCCLFVP LLLAVIRGEL SALWNYDESR HVDNEENRKK VDSGKKNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.87
Transmembrane Helix	28	48	0.89
Cytoplasmic	49	67	0.91
Transmembrane Helix	68	86	0.76
Non-Cytoplasmic	87	171	0.73
Transmembrane Helix	172	193	0.50
Cytoplasmic	194	288	0.55
Transmembrane Helix	289	309	0.87
Non-Cytoplasmic	310	347	0.87
Transmembrane Helix	348	367	0.90
Cytoplasmic	368	388	0.90
Transmembrane Helix	389	409	0.96
Non-Cytoplasmic	410	417	0.73
Transmembrane Helix	418	436	0.96
Cytoplasmic	437	468	0.93