YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06282
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIKSEQKE SEELVLPNDR PQYEQRVTKQ PTSGKYIIIT ITLISIIIVG FGLGLCAQIY  60
   61 FQAESDVLPI CDKRIIGYYS GSGTSNITST QLSNLTHTVF AFVYMTPDGT LLFNNQIEKN 120
  121 RFLKLKEVVR NGNSKIKLMF SIGGKDNSKY FSSVIPSEER IQTFIESILE FLEAYDLDGV 180
  181 DLFWKWPEEE YRDAYFAFIN QLRKTFEAKK KYYILSIVIP PPTLDGWGKK RLNKIIESVD 240
  241 FINAYSTDYY TPLADNLSDD IAGPSAPIYF GAQGKSERNV HHTARNYSCL TKQASKFNIV 300
  301 IPFYATLWEN VYETVLDSKR GVYRHVAPFY GRTVGKTYLS RLAVKQEGFQ VESYSYDPAP 360
  361 RAAFSYNRTI GIYLTFETKE SIRAKIDYVK DRILGGVWIF SVDMDDETNS QLKAVSFDGF 420
  421 CTIGNGSKYE CV

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	60	0.88
Non-Cytoplasmic	61	432	0.94