YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-126
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKRKEIQE KRYHFDMEKI LVTISTGAAS IAVLAVLFTV PSLYNTINEV HDQVLDGVSV  60
   61 FRVETDSAWT EMMDIQVTVT PPTKPRVNPF NSVFRQKRQT FSGLPAWCQC EPTKPTCPPG 120
  121 PPGPPGQPGA PGVPGAPGPR GGDSTVTYAP INCPQVSFDC IKCPAGPAGP AGSSGPAGPA 180
  181 GPSGQPGTPG QRGNDGFPGA PGAPGDNGQP GFPGQDGAPG QPGADGQRGA GTPGAPGAPG 240
  241 NAGPAGPSGQ DGFPGQDGAP GSAGPAGQDG FPGNNGSDGQ PGAPGGPGLP GNDAAYCACP 300
  301 PRSAVFLSRH

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	310	0.99