YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05393
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.67
Transmembrane Helix	46	67	0.91
Cytoplasmic	68	74	0.86
Transmembrane Helix	75	94	0.94
Non-Cytoplasmic	95	101	0.64
Transmembrane Helix	102	124	0.80
Cytoplasmic	125	136	0.83
Transmembrane Helix	137	159	0.90
Non-Cytoplasmic	160	166	0.82
Transmembrane Helix	167	188	0.93
Cytoplasmic	189	226	0.92
Transmembrane Helix	227	246	0.88
Non-Cytoplasmic	247	276	0.93
Transmembrane Helix	277	298	0.89
Cytoplasmic	299	317	0.81
Transmembrane Helix	318	338	0.94
Non-Cytoplasmic	339	343	0.84
Transmembrane Helix	344	364	0.94
Cytoplasmic	365	379	0.89
Transmembrane Helix	380	402	0.89
Non-Cytoplasmic	403	421	0.90
Transmembrane Helix	422	444	0.92
Cytoplasmic	445	488	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSQQDYIS VTALFVVNLL NYVDRYTVAG VLTQVQTYYN ISDSLGGLIQ TVFLISFMVF  60
   61 SPVCGYLGDR FNRKWIMIIG VGIWLGAVLG SSFVPANHFW LFLVLRSFVG IGEASYSNVA 120
  121 PSLISDMFNG QKRSTVFMIF YFAIPVGSGL GFIVGSNVAT LTGHWQWGIR VSAIAGLIVM 180
  181 IALVLFTYEP ERGAADKAMG ESKDVVVTTN TTYLEDLVIL LKTPTLVACT WGYTALVFVS 240
  241 GTLSWWEPTV IQHLTAWHQG LNDTKDLAST DKDRVALYFG AITTAGGLIG VIFGSMLSKW 300
  301 LVAGWGPFRR LQTDRAQPLV AGGGALLAAP FLLIGMIFGD KSLVLLYIMI FFGITFMCFN 360
  361 WGLNIDMLTT VIHPNRRSTA FSYFVLVSHL FGDASGPYLI GLISDAIRHG STYPKDQYHS 420
  421 LVSATYCCVA LLLLSAGLYF VSSLTLVSDR KKFRAEMGLD DLQSKPIRTS TDSLERIGIN 480
  481 DDVASSRL