YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05242
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKPCAKPG AEIEIISMVM QILDWQWEVI DTEKEFNVVN DFGNPQPDGN FSGIMGLLAQ  60
   61 DKIDMSGLSM RITPARMEFA HFTFPIRYFQ QVYIIKRPAE NDFRNFVFAP FTTDMWLLLL 120
  121 ATIMGASTMR FACALYWDSR VGSKFNIYTS SVLETFGLML KQRVQDPTAV STMLLEGFLI 180
  181 VAMMSIAQYY QTSMNSRLTA PPSSRIPFLH QNQLIELLLD KETYLTYYFN LTLEGSTEKN 240
  241 EYNIKRALAM NPIVVRAREA DLIKEIQKGG VFYSTYDIEF LPQAVSVWDK RQGLTVIRDT 300
  301 SGILSYVAFG FSISNRKLCQ MFNKALLKIL PGIASITLGP GYGTKKQPED ITVQVKKTRL 360
  361 SLKKHLEQLF YIYLIGCGIA LAFFIIEKVF FRMRVLKRQK VYQVNRQESD VTPECTFTPL 420
  421 PYH

Type	Start	End	Confidence
Cytoplasmic	1	112	0.63
Transmembrane Helix	113	134	0.73
Non-Cytoplasmic	135	144	0.52
Transmembrane Helix	145	160	0.15
Cytoplasmic	161	167	0.43
Transmembrane Helix	168	190	0.76
Non-Cytoplasmic	191	368	0.57
Transmembrane Helix	369	391	0.92
Cytoplasmic	392	423	0.84