YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	irk-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLDTNTITF PFFVNGLFRF QDSANSLVIQ TKMPSCAHSI SALSFLESIR TLAFTARRNS  60
   61 SPLYRKSTKK LKKSRLVGKN GICNVYNTNV PKKDRQYLRD IFTTMIDVKW RWMLMLFASA 120
  121 FVLSWSIFGT TYYLIALVHG DLSLPTPVNH TACVMNLDSV YSSFLFAVET HHTIGYGHRY 180
  181 ITTECYLAGA IVCLQAICAL LLQSFMVGIV FAKMARPKKR AETIIFSDKA VICLRDGQLC 240
  241 FLCRVGDMRN THLVEAHVRL QFITDRETNE GEIEPLHQFE MKVGPSIADD DRLFLVWPTT 300
  301 LCHVIDSRSP LYNYNQQTLM SAQFEIIVLL EGIVESTGMT AQAKTSYLPS EVLWGHRFRK 360
  361 LVTYQRSNGS YQIDYDLFHS TYPVRTPAMS PAEFYSSKPN LKDYYCHDSH EHKLEDNRSS 420
  421 DSTPLPSPSP YSYPSTPLNH FQSSSNSPVF SNNHSKFNTE AVTCEAGMLC PPTIVVQCPS 480
  481 TCASPNHMRR TRNQMDKSRT RYSIA

Type	Start	End	Confidence
Cytoplasmic	1	111	0.97
Transmembrane Helix	112	136	0.88
Non-Cytoplasmic	137	186	0.93
Transmembrane Helix	187	211	0.90
Cytoplasmic	212	505	0.92