YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04161
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQPPAENA DVRQRRAPES PVTERLRAPA RDDARPTSDE SDMEGILQDE DRLERLTQAI  60
   61 PQDKGSLGVF ADSMLEALPP RWRNWVVRGL FSIIMISTFT FIVTRGATWL MFLVFLIQFK 120
  121 CFQEIISIGL AVYRLYDFPW FRALSWYFLL TSNYFFFGES LIDYWGIVLK KDNFLHFLVA 180
  181 YHRLVSFALY CIGFVSFVLS LRKGYYMRQF SLFAWTHLTL LLIVSQSFFI IQNIFQGLIW 240
  241 FLAPVAMIIC CDIMSYMFGF FWGKTPLIKL SPKKTWEGFI GGAFSTVVFG ILLSLALYNR 300
  301 PFFVCPVQHY QTDSSNCTIP LAFQLQDYPV PRPFSFVYKI LRKEPIIQLC PFVFHSIALS 360
  361 LFASILGPFG GFFASGFKRA FKIKDFGDVI PGHGGLMDRF DCQLLMGTFV MVYIHSFIRV 420
  421 PDASKLLKQI MTLEPQDQLN IFNLLQSELS KTGLI

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	104	0.91
Non-Cytoplasmic	105	111	0.63
Transmembrane Helix	112	133	0.85
Cytoplasmic	134	142	0.71
Transmembrane Helix	143	162	0.87
Non-Cytoplasmic	163	178	0.81
Transmembrane Helix	179	201	0.90
Cytoplasmic	202	211	0.83
Transmembrane Helix	212	231	0.95
Non-Cytoplasmic	232	238	0.77
Transmembrane Helix	239	262	0.91
Cytoplasmic	263	277	0.87
Transmembrane Helix	278	298	0.93
Non-Cytoplasmic	299	353	0.94
Transmembrane Helix	354	376	0.89
Cytoplasmic	377	455	0.79