YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03543
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVFKKLSR HYNNENFTPT FKKYCKYLWT ICLLLAFCGI VAYGLTFLIF RYYGNQDFII  60
   61 EHQEILYQLS TVKPDPINTK NRDYKKRIVG YYYRNGNDSI MMGQLAKLTH AVFAFLELHP 120
  121 DGTIHFESRK AKESFLYLRK LASILKFDAK IMFSIGGPAN TQFFSPIIQN EEMKRKFIDS 180
  181 IIYFLKQYKL DGVDLFWKWS SSGDKFTYSS FLQELKHKLR SHRQNYIISI VLPPAGVDTW 240
  241 ELGYDLEEIM EHVDFMNVYS MDYSGPWDNQ WGTPTGPSAP LAFNIGPRKN FNVDWTMKYY 300
  301 SCKTQQPGKF NMVIPFYARY WNNVQEAVDP RTEVFRNAEI RNNRADGVPY MDRSSADYKM 360
  361 ASWDNLTSTP YIWKPDERRF FTFENQKSIA IKTRYAIDMN LGGVWIWSVD MGDHGNVLLS 420
  421 AVASQEFLTS KNNGKNKYKC

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	50	0.88
Non-Cytoplasmic	51	440	0.97