YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ccdc-47
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVWIFLIF FIGFAISTDD NEFAEFEDEF VGSSATQAPE IQREGEPPVL KQKDDFEEED  60
   61 FGVVEEEPEE AEKVREADSD DAAPAQPLKF ADVPAHFRSN WASYQVEGIV VLIILIYMTN 120
  121 YLIGKTTNAS IAQTIFDMCR PTLEEQFAVV GDDGTTDLDK MIPSLKHDTD STFSAWCTGR 180
  181 VNVNSLFLQM KMVKRQDVVS RIMEMFTPSG DKMTIKASLE TTNDTDPLIF AVGEKKIASK 240
  241 YFKEMLDLNS FASERKQAAQ QFNLPASWQV YADQNEVVFS ILDPGVVSLL KKHEDAIEFI 300
  301 HISDQFTGPK PAEGESYTRL PEAQRYMFVS LNLQYLGQDE ESVMEILNLV FYLIDKARKM 360
  361 KLSKDAKVKA ERRRKEFEDA FLKQTHQFRQ EAAQARREEK TRERKQKLMD ESDPERQKRL 420
  421 EAKELKREAK AKSPKMKQLK VK

Type	Start	End	Confidence
Signal Peptide	1	17	0.88
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	442	0.98