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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC3E7.09
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.55
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRRLSAFG NAFLIYFIIF RLCCCSPQTS HWCKYPALCL KSPDTHNENL VCDAYLSVIA  60
   61 TKSEEKEASN PTTWDFTPTN KYQEPSFHTK TSLNGSDTIS SNFLSKYEYS NGTSTSEFID 120
  121 SISPPLVNET STISSSKKLE QNYSVTEVID TNIITSSSVT LPISEDGSST SAAATIDSNI 180
  181 DEKTVAFSEE KRFNFASTDC AAAVIKTNPE AVGSSSILTE NKDKYMLNKC SAENKFVVIE 240
  241 LCEDIYVDTV QIANFEFFSS IFRDFKVSVS GKYPKYESSW MELGTFTALN LRTLQSFHIE 300
  301 NPLIWAKYLK IEFLTHYGSE FYCPVSLLRV YGKTMIEEFE EANEDFLEQK VNDGSAIKAD 360
  361 EIRKPQESPI FVDEEDTDVQ SKPVRKNPSV ELNSTDTLLS STVISKSLST VVIGNETGKS 420
  421 ESYPATSTRS FNDISPSSSS SYSTAQISTF PSNQESIYKN INKRLSTLEE RKKAFDEIVE 480
  481 KILTNYGKHN AKNMNFTQLL HELNSTLQLE ISKLSKSVVK PSLFALQAKL ELLSAENEYF 540
  541 QSQITSLYQE SSFQKRLLML QLTVLIVLTV YMAVSRLPEN LPTTRSSSNN PIEASRPPFS 600
  601 RDEQDISKAN DFRVSASSAV YTVGPELLQR KKRDPNTSIR SIHEREQDKI IHSRSHSVC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle