YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC970.02
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTIFISLA TILFSFAEAI SVDLNDTSSV DLATSLVADG LLNYYAGQHK GGTIGMFLPP  60
   61 AYWWEAGAAW NGLLNRYIAT GNSTYNELVK TSMLYQSGED SDYMPSNYTT SEGNDDQAFW 120
  121 GLTVISAAEA NFSNPAADEP QWLELAQAVF NQQVTRWDTD HCNGGLRWQI TEFNSGYNYK 180
  181 NTVSNGAFFQ LAARLARFTD NDTYAEWANV AYDWSQRIGF IQEDYTVFDG SSIKDNCSSI 240
  241 EITQWTYNIG LYMAGAAYMY NYTNSTVWKT RVEGFANKTA KTFFFKDIMF EPVCEIALSC 300
  301 NYDQTSFKGF LTRFMVYTAQ MAPFTAPLLE PLLISTAKAA AGACCGGYDG VTCGVQWWWN 360
  361 NDTWDGLYGL GEQMSALEAI QAPLLLKSLQ VFKASNGGSS TGDPNAGLYT APVSFANKNF 420
  421 ENLRKHWMLL GFFLLVPTLV LY

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	442	0.97