YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	its8
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	450	0.99
Transmembrane Helix	451	472	0.89
Cytoplasmic	473	483	0.93
Transmembrane Helix	484	503	0.93
Non-Cytoplasmic	504	509	0.77
Transmembrane Helix	510	529	0.91
Cytoplasmic	530	547	0.89
Transmembrane Helix	548	569	0.92
Non-Cytoplasmic	570	575	0.74
Transmembrane Helix	576	593	0.69
Cytoplasmic	594	601	0.59
Transmembrane Helix	602	621	0.91
Non-Cytoplasmic	622	626	0.65
Transmembrane Helix	627	647	0.96
Cytoplasmic	648	662	0.66
Transmembrane Helix	663	682	0.83
Non-Cytoplasmic	683	688	0.57
Transmembrane Helix	689	711	0.84
Cytoplasmic	712	724	0.53
Transmembrane Helix	725	752	0.80
Non-Cytoplasmic	753	793	0.47
Transmembrane Helix	794	819	0.80
Cytoplasmic	820	834	0.41
Transmembrane Helix	835	856	0.90
Non-Cytoplasmic	857	864	0.39
Transmembrane Helix	865	886	0.91
Cytoplasmic	887	894	0.45
Transmembrane Helix	895	920	0.74
Non-Cytoplasmic	921	935	0.42

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGRLLLLGI LFHVVFLKSI FDIYFVTPLI HGMKQYSAGE APAKRLFLIV GDGLRPDKLL  60
   61 QPHSEKVIGE EQTYAAPFLR SIIQNNGTFG VSHTRVPTES RPGHVALIAG FYEDVSAVTK 120
  121 GWKKNPVNFD SVFNQSRHTY SFGSEDILPM FSEGASDPSR VDTFMYSSEL EDFSSNGIVL 180
  181 DEWVFDRLDE LLAQSLEDKE LWDMLHRDKI VFFLHLLGID TIGHNKHPDS VEYVENIQYI 240
  241 DGKIQELVDK MNNYYNNDGA SSWVFTADHG MSDFGSHGDG NLDNTRTPII AWGAGIQSPT 300
  301 HEKNYGHDEY SLPWNLTEIK RIDIQQADIA ALMSYLVGLN FPVNSVGQIP LDYLDCSSRR 360
  361 KAEVALMNAL EIGEQYNLKS ASKDQTSIFF RPYSPLRNYT EVQASFYNSV IADIESGEYE 420
  421 IAIEHCFHFS QTVLSGLRYL QRYDWLLLRS IVFFGYLSWI GYVICFVFSL NIEPSSKIVK 480
  481 PVSVVKRVAF NIPFLLICIF FYIQSSPPFY YGYALFPTIF LQLIHSIFPN TKLGFKNFLT 540
  541 VAKQKHGFSL LKILFISLCI LCLLQFIVYS YFHREGFSVI LMGLAAWPWL LHADYAFSHK 600
  601 TISVSWSVLT SLLCFFTILP VNKKESLLFI FAGGFAMSVA GVFYILYRRN QAFQYSSTVT 660
  661 NKQLVLQVLI IMATVPVTLK IADSLQRNIA IPPILRLVAF GLFITSYIIP SHHIRSCKHY 720
  721 FLDRLAILFL TFSPTMCMLS ISFEALFYVV LFITLGLWME LETELQKYTE QLHPEYSRKK 780
  781 DAKFHLSLSH IRISLFFYIF INVAFFGTGN VASLSTFALD SVKRFIPVFN PVTQGALLMY 840
  841 TILVPFIALS AAFGIMNKRL GGIQQVTFFL AVGMADIVTI NFFYLVKDEG SWKDIGVSIS 900
  901 HFCISNFLIL FITALEHASA ILCKNITYTI HEKVN