YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erg27
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRKYALIT GSNSGLGFGI ATRLLQFYQP RLQDEPEVFT VILTCRSREK AEDACRRLKE  60
   61 FFPDRKIRLE YVLLDLSNMA SVEAAVQDIA TRFPKLDFVY LNAGAWDLEG IQWLKAIFST 120
  121 LINPIQALTH PTFYKETAGR VSNDSLGYIF ESNVFGHFYL KNRLAELKVL RSSTKVVLTS 180
  181 SLVAEKKSLD FEDLQCFHGE QPYQSSKRLL DVLHYAELEK GLPFEQYLVH PGLCTTNMYE 240
  241 TFLGPILVMC AKLGFYICRL LGSPWHTISP YVAAFAFLWT ALHATKEDQS IKWGAAVTRF 300
  301 GHERVLSTPV ELILPSEQEK ALEYMTKLYQ EWKKKLVS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.49
Transmembrane Helix	7	22	0.42
Non-Cytoplasmic	23	338	0.82