YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	str2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.95
Transmembrane Helix	65	81	0.90
Non-Cytoplasmic	82	98	0.81
Transmembrane Helix	99	119	0.86
Cytoplasmic	120	132	0.72
Transmembrane Helix	133	150	0.94
Non-Cytoplasmic	151	158	0.72
Transmembrane Helix	159	180	0.91
Cytoplasmic	181	189	0.82
Transmembrane Helix	190	213	0.80
Non-Cytoplasmic	214	224	0.85
Transmembrane Helix	225	245	0.94
Cytoplasmic	246	280	0.91
Transmembrane Helix	281	300	0.91
Non-Cytoplasmic	301	311	0.83
Transmembrane Helix	312	332	0.94
Cytoplasmic	333	350	0.89
Transmembrane Helix	351	370	0.94
Non-Cytoplasmic	371	388	0.84
Transmembrane Helix	389	409	0.93
Cytoplasmic	410	417	0.87
Transmembrane Helix	418	439	0.94
Non-Cytoplasmic	440	447	0.82
Transmembrane Helix	448	470	0.89
Cytoplasmic	471	482	0.88
Transmembrane Helix	483	505	0.91
Non-Cytoplasmic	506	559	0.98
Transmembrane Helix	560	578	0.66
Cytoplasmic	579	597	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENYGSMEH RKKSFRNNEN LEQQFHPLRE ELDNAGPIND RTSELSLEGV SKAEAIASTW  60
   61 SKRSIIVAYL GLYLLSFASS LEQQTTYSLQ RYATSNFSAH SNLATINLVG NILLAVVRAP 120
  121 MVKAADVFGR SESLSLALGM TVLGYLSLAF SRNIQMFTVA YILYICGQTG LGLLSQLIIA 180
  181 DTSSLLNRGI LSAIPELPYL ATVWIGPVLA QAFHPEKNYG WRLGYGIWAF ILPTVSLPLL 240
  241 ASLFLNQRKA KAAGLYREHH NLINHSTPEK LRLFYLFWQE LDGLGIVLFV SGFTLLLLPF 300
  301 SHSSQVVSPD STILTLFTIT LSIALLVTLC FYDVKYARYP VFALKSLKDR TILGSCVLIF 360
  361 TYFMSYYIFS NFLTSFLQVS YGLSIDMSSL TLNVFVFSMT TTAILSGFLM KRFGRFKMLL 420
  421 MISVPMYVLG ILGIILFGIN DNHYTRPLVL VLILAGMGGG LLTLSAQIAV QSVSSHAKLG 480
  481 MNLTLYLTFS SVGGAFGSAI AGGVWSKRLS SRLLHDLKDH LPVPEIESIF RDLRTALSYP 540
  541 QGTQIRNIIN VAYTATEKDL FHISLVASLF MFAGLVIIRD VPLSTENHDT AVETPSE