YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fsv1
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLLLIIDS VSQKIRDRRK LEEFGQNPDE EIESSLKDVR QELQKLNEEQ SRLEKNAQIP  60
   61 EYRVRESEAF LIRMQRRLES AEEEFEKQRR ASSIPADGTS AFSANPQVAS TNNKLTPLPS 120
  121 LQKTTSSSEG SDIEMEAMYP VDGNDPDPIN VNVLAQMHQQ MLNEQEESLG GIEASVQRQK 180
  181 RMGYAMNTEL SEQNVLLDNM NNDADRIERR FDHAKNRLNK VSRKAKQYPR CFIILLLCAL 240
  241 LLLVASI

Type	Start	End	Confidence
Cytoplasmic	1	226	0.91
Transmembrane Helix	227	246	0.87
Non-Cytoplasmic	247	247	0.98