YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC14F5.07
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.99
Transmembrane Helix	90	110	0.94
Non-Cytoplasmic	111	163	0.93
Transmembrane Helix	164	181	0.90
Cytoplasmic	182	449	0.95
Transmembrane Helix	450	473	0.88
Non-Cytoplasmic	474	491	0.82
Transmembrane Helix	492	516	0.80
Cytoplasmic	517	581	0.83
Transmembrane Helix	582	599	0.51
Non-Cytoplasmic	600	613	0.56
Transmembrane Helix	614	632	0.64
Cytoplasmic	633	665	0.90
Transmembrane Helix	666	691	0.83
Non-Cytoplasmic	692	710	0.86
Transmembrane Helix	711	732	0.90
Cytoplasmic	733	769	0.96
Transmembrane Helix	770	792	0.91
Non-Cytoplasmic	793	811	0.83
Transmembrane Helix	812	830	0.92
Cytoplasmic	831	962	0.99
Transmembrane Helix	963	986	0.89
Non-Cytoplasmic	987	1002	0.92
Transmembrane Helix	1003	1027	0.84
Cytoplasmic	1028	1049	0.92
Transmembrane Helix	1050	1073	0.88
Non-Cytoplasmic	1074	1093	0.83
Transmembrane Helix	1094	1113	0.88
Cytoplasmic	1114	1143	0.91
Transmembrane Helix	1144	1165	0.89
Non-Cytoplasmic	1166	1182	0.86
Transmembrane Helix	1183	1204	0.87
Cytoplasmic	1205	1242	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNADDEICRV CRCEGAPDSP LFHPCKCTGS IRYVHQECLV EWLGHSKKTH CELCKAKFEF  60
   61 TKVYSESMPR TIPFTILCRK LASTLKQRVI FFTRVLLTFF CWTVLLPLIF KHVWNLNFKI 120
  121 GDTYTIHARN KTFTAPQKPG YFESISQITS SPRLNTLIAN TAEGQVLTFV VTFILITAFL 180
  181 VREWVLQNAV QVADELQGQQ FENVNQNNQA QAAAAAAQNL REVREARQRL AMVMEHLRER 240
  241 QEQRNLELQR NGSFEEIERA RQRFALLGDN IREPQEEEND VDVDEIFNRQ QLNQPALDLN 300
  301 DANSSNSVPV EFNSLHSQNV DYRDEVDSLR PQFNVDEQSS ISHSSNASEN IVDGAVTQAN 360
  361 GIESDFTRVD HEPIIVNNDD ENGNNESENE EVIEEDNLNR NVIAEAQNQV VADEERNAVA 420
  421 RAAQIAEADD ADDFDGILEF LGLRGPITGF LQNCLVIAFV VSVFLTTAVG IPYMSGRLMV 480
  481 EWILFIIHRP TFILRFILSF VNILFDWTVG GAFNIVKILT KLPLLSTVFV KLKLQGIFSS 540
  541 SFQQVSNNMY SWIYDHVFSS SDHAYESLIY YMKTGHKQVV QSFSIFPVFR VCQMFAVILK 600
  601 DFVENYSNRP VDRVFTTLIG YCMFTFLGIS YLNRKQFLFN DPQIRNVELA FREVLRQCGS 660
  661 IAKFGIIFSI ELVVFPIFCG ILLSMCLIGT FKKLAAENLL NVMTVYPAQS IFLAWFIGIT 720
  721 FMFEFAVFIS MVRKIVRPGV LYFLRDPNDP QFHPIREILE KPMLFQLKKI GFSAILYFAF 780
  781 IIGCVGSVIH LLKSTGIIFP IEFTTKPAVF EAPIDLLALE ILIFLSIKLF KPLELTRSFW 840
  841 RTLVSTFCRC LRLSSYVMGQ RYSDEEGYYP KQYFSFLRRI ISKPSDTENQ DDGDKQKAKK 900
  901 DFVQDGFFLW CPSKDVVPVR QGAMLIPVTE NGYEIFGEKK KVEENADYTI TYAPSNFYKR 960
  961 LIALLLFCWI CSTLVTVLLV FVPLSLGRAI YAWCFPNVVK HDFYAYAIGF YSISFPMYAI1020
 1021 HASVKFLKLD YLRSLMNKLN LKIVMRSLVM ALKYLLLAFL GIFILPLLLG AIWELYVAIP1080
 1081 FRTIFNRGTL ALDAFQNWVI GLFMLRMIYF TVTSNEERFV SRLFQDAFRD RWTNPQILPL1140
 1141 LKNVLIPFTS ALIAAVVLPS VFTYVTYPFL SSIFPSASKT LMYRLMHPIF LALLGLALLG1200
 1201 RRFVETSSKW SQGIRDDLYL VGTRLHNFGE SAPPAISESA EK