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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sre1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.45
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSIPSVSV SVASPAMETP TKASPDSKSP NSVGAIPSSS PLASSTKAST STPFVENCSN  60
   61 LLCDLASIVE DSPPTLTNTS LSPHSFSLSD MESSMSNWLN PFAFDNTMNS APPLFTSTNM 120
  121 GSPNSLENST NPLLSNCGSP NSFQNETFTG PSLNEFDADD KIQRQMKILH SVDTIDPSTV 180
  181 QNYPSADMSN PEVKLKTEEI ITPMDTTCKP EPSAKKIKLS PSSEDSCSIP ETLPFSAPKS 240
  241 RGSLSPSETP DFVAGPGGKP KKTAHNMIEK RYRTNLNDRI CELRDAVPSL RAAAALRCGN 300
  301 SLDDEDLGGL TPARKLNKGT ILAKATEYIR HLEAKNKELQ KTNKQLSDRL AFYEDPSMAP 360
  361 PSNDTRAVNS VNVVSSSDYS VHQSSRPNLT QRAFTSPTLN TMGRTALNGM VGLGLFNYFG 420
  421 NDSSQSVYGL FALPPFLMSP FTGTVLFNML KIGVVLLGLF YLLHDNSLFK GFKGEKKSKV 480
  481 STRSSMSPSS ILFRKTVFEK YCLLDHSTST ISLFFGLLIF TLKSAYGYLT HRLSALYTSS 540
  541 ENWVYSEQQL AEVRNMEKLL DAQLMGGDAK VDRLRLLMVF ASSFSLPPSS HTCALQAMYC 600
  601 QLIFSNTSVP SAIVSKCVAF FWNAAKKQHS KSSVHAELRE LPECTANLIE NSHADDVFSP 660
  661 NMVERLWVLA KCTRDSAQMS DSIISSLSDV LVLSPLEVLA SWYAADLLDA LLMESLSRKV 720
  721 EISEIEEIIS LCPKNSSIIR HALLAKLVLF PENTADSLNE VLAAYKNTLD LCSQDKRKQS 780
  781 SVLKINLSKL FTLHSCLSLA LQRLGYGDVS KRMYQEIFVP DSDADITPLS FIISWTALNT 840
  841 FAPICTSPKE NDVVEKMAMY VRTAIGTLKI QDLKLSRKLI NSCIDIGSRL QEDLGYVSSA 900
  901 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle