YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC947.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILARDDKWT LGSIALIFVL LIGFALLFLL ERFRVKEKSR TFKDCVNVYQ CPSKGERVYL  60
   61 ALRHWFIFLA THKAQMTLIL SPLVMLVTIP FTGKETKNSI ASYDWNLTGV AARLGYLSCG 120
  121 LFFVSYFFSL KNNPFCLMLF SSHEKMNYLH RWLSVYAVLI SVLHGILFMI FSAQSYKPLL 180
  181 YDKISIYGYF ITVVLFLMTV ASLPSVRRKF FEWFFVLHHT CSVLIIFLIW LHHPRTIVYM 240
  241 KACIIIYAFD RGCRLFRSIW NRSNFRIYLL NEDMIYMVGR KPKRSFFALP WAAGSHVYIN 300
  301 IPSLSYWQVH PFTLASAPFD DFIELFVAVH SGFTERLANR LYSMPHEYPN FSLAPGTPES 360
  361 LSNTYRELNS FKSYAVEIEN TAQGHTYEPE DLYLETTVFM DGPYGTTSNV FKEYSYVLLI 420
  421 AGGVGFSYTL PILRDLILKE CNVTSITFIW SCRSLSLLKV ASKSLNSLLH QSNVRLKIIN 480
  481 HFTGSISCKE SSEFSNQTTE NSEMEFFDDR PDLDMYIQKF FDYVGYQTAA LAACGSQSFL 540
  541 KRIKNSVNKS ISSTTDIYQH YEEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.93
Cytoplasmic	31	68	0.85
Transmembrane Helix	69	92	0.79
Non-Cytoplasmic	93	109	0.83
Transmembrane Helix	110	130	0.92
Cytoplasmic	131	148	0.85
Transmembrane Helix	149	171	0.89
Non-Cytoplasmic	172	183	0.76
Transmembrane Helix	184	203	0.93
Cytoplasmic	204	212	0.67
Transmembrane Helix	213	231	0.94
Non-Cytoplasmic	232	236	0.72
Transmembrane Helix	237	255	0.67
Cytoplasmic	256	286	0.75
Transmembrane Helix	287	306	0.67
Non-Cytoplasmic	307	564	0.68