YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC965.13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.98
Transmembrane Helix	89	110	0.85
Non-Cytoplasmic	111	123	0.79
Transmembrane Helix	124	146	0.86
Cytoplasmic	147	155	0.80
Transmembrane Helix	156	175	0.92
Non-Cytoplasmic	176	181	0.75
Transmembrane Helix	182	201	0.91
Cytoplasmic	202	211	0.71
Transmembrane Helix	212	233	0.88
Non-Cytoplasmic	234	243	0.81
Transmembrane Helix	244	263	0.90
Cytoplasmic	264	313	0.87
Transmembrane Helix	314	333	0.86
Non-Cytoplasmic	334	352	0.85
Transmembrane Helix	353	372	0.93
Cytoplasmic	373	392	0.85
Transmembrane Helix	393	412	0.97
Non-Cytoplasmic	413	419	0.83
Transmembrane Helix	420	442	0.87
Cytoplasmic	443	452	0.82
Transmembrane Helix	453	477	0.87
Non-Cytoplasmic	478	485	0.86
Transmembrane Helix	486	508	0.93
Cytoplasmic	509	537	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILNVIRSH HDVEPQNVEE EPPLTGQTIV TEDKLETSAK DKKHESPSMS EDEEGSVENV  60
   61 DAWDLTKALM SIDPNHPAHP HKWPLWKKLF VATVYTFLEV YVIWSSTACI NFFDIYQTNW 120
  121 HCSIQVSYLV QSLFIVGNAF GPMLLGPMSD IFGRKWVYVG SLILYIIFQI PQALAYNLPM 180
  181 MAINSAIAGA FGSSALANVA SSMCDIFTPE TVGFGISLFV WGANAGASIG SPIGEALYDH 240
  241 WRWFYWMNMI VGGFFVILCV LCPETLPVIN IMNYSSTTGE KTVQVSTLAK AKSAVVRTKF 300
  301 VLSTAFKLLC TEPIIMALGL YNGFAYGLIF LYLDGLFPVF VDNYKMGYMG ANLTYLNFLV 360
  361 GVTIVVMLQP IQNWLYRWDK RRHGGVARPE ARFLISLLTV WFFPAGLFWF AFTSDGRISW 420
  421 VSPLIAGGVL GVGDPQLWLA MINYITDSYP SVAGSAIAAF TLPSFAIAAV LVHLGIIMFD 480
  481 NMTTTWAMAT LAFISLSLVA TIYVIYFFGH LIRKHSRLAV TQQALQEAHD AKVLPEV