YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16E9.14c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNHNIPTA IQIQNPINNN VSVTISDQLP KPSANNPNLL SVDTRPTHRK GHHHKHSLSH  60
   61 QYFLPPKNRQ PLEIPASYPI PTFKETFAIL TFPQKLKLTS SILFFLVAVG VLLSGDATIL 120
  121 LTLSCSLIVE GVLIIINVWR ETLDSFLVWR HTCLRYPFGM QQMELLVDFS FSILLIFLGM 180
  181 NLLKEPAEHA IEDWGNLHHA GDHEEETVHI HLTISLFASA IISGFALLLD HPSAHIRELN 240
  241 SRFFHGLTLV PSLILVLLLS LGYQVGSFLS HLLSLTIAVT ALVNGFSIAK SLALMLLLTY 300
  301 SNKEKVFECV SLIKEDTRID QLNYAAIWQP HYNTCIANIG LTVSGGEREQ AAVREDIIRI 360
  361 IQKTVGSIFG AGVQPKWEIS VDIQRA

Type	Start	End	Confidence
Cytoplasmic	1	95	0.95
Transmembrane Helix	96	114	0.87
Non-Cytoplasmic	115	118	0.65
Transmembrane Helix	119	139	0.88
Cytoplasmic	140	164	0.76
Transmembrane Helix	165	183	0.86
Non-Cytoplasmic	184	207	0.94
Transmembrane Helix	208	229	0.94
Cytoplasmic	230	242	0.87
Transmembrane Helix	243	263	0.93
Non-Cytoplasmic	264	270	0.69
Transmembrane Helix	271	294	0.81
Cytoplasmic	295	386	0.97