YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	btn1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	35	0.89
Non-Cytoplasmic	36	44	0.70
Transmembrane Helix	45	63	0.88
Cytoplasmic	64	71	0.77
Transmembrane Helix	72	92	0.89
Non-Cytoplasmic	93	99	0.80
Transmembrane Helix	100	120	0.87
Cytoplasmic	121	128	0.77
Transmembrane Helix	129	151	0.88
Non-Cytoplasmic	152	159	0.68
Transmembrane Helix	160	180	0.94
Cytoplasmic	181	289	0.72
Transmembrane Helix	290	314	0.81
Non-Cytoplasmic	315	319	0.61
Transmembrane Helix	320	341	0.89
Cytoplasmic	342	353	0.68
Transmembrane Helix	354	377	0.54
Non-Cytoplasmic	378	396	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLRLTKDA KVGCCFLIFG LLNNLLYVII LSAALDLVGA NVSKGVVLLS NIVPSLACKL  60
   61 SASILHVHKF KFAKRIGFCV FMSILGMQWI AWSSSVPSKM LGVSLAAISS SFGEISFLHL 120
  121 SSRYHSVSLP CWSSGTGLAG LFGASSYLVM TTWFNFSVRS TLIISSFLPL FLLIMYFFVL 180
  181 PESESTSPSI NNNYTPIESI DLRAGHVSFN FVNSLKQTFI FMQPYLLSHM FPQFLVYFSE 240
  241 YTINIGVAPT LLFPPEKAGF SSFRDFYPTY QTVYQIGVFL SRSSISFFTV PYLRTLAITQ 300
  301 FIILLFTILQ SALYLTSSYH FVLFLIFVEG LIGGTVYVNV YHSLQTTESS QRELAISTVG 360
  361 SSDSSGIFLA SLVSLFLEPS LCHFQADRGR DWCALT