YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC887.02
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	58	0.90
Non-Cytoplasmic	59	102	0.94
Transmembrane Helix	103	127	0.88
Cytoplasmic	128	158	0.86
Transmembrane Helix	159	178	0.68
Non-Cytoplasmic	179	210	0.72
Transmembrane Helix	211	235	0.86
Cytoplasmic	236	249	0.64
Transmembrane Helix	250	268	0.88
Non-Cytoplasmic	269	292	0.76
Transmembrane Helix	293	314	0.92
Cytoplasmic	315	325	0.77
Transmembrane Helix	326	347	0.92
Non-Cytoplasmic	348	387	0.66
Transmembrane Helix	388	422	0.76
Cytoplasmic	423	432	0.39
Transmembrane Helix	433	453	0.82
Non-Cytoplasmic	454	456	0.37
Transmembrane Helix	457	484	0.76
Cytoplasmic	485	667	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDDQLIDWI HERYEEQKSA NRLAGRFRFL GLETKYSIIS IISGIFIGLT AALLNALASL  60
   61 LNSFREGYCT VNILFDKQTC CSTLTEDYEC QEFFFWRNNH SVFVSCLIYV SVSVGFAFIA 120
  121 TTLGYVVAPA ARASGIPTIK AILSGYKYPD MNVFFSIKTL CSKSLAVCFS VASGLWVGKE 180
  181 GPFVHIATNI IYLVERIAPS LADSEIFTRQ LLAAAMASGI AASFNAPVGG VIFALEQLAS 240
  241 SSFPSLFTGS IWYEFLCSAS SVVALQLIRS WHTDVGYLSY VSLDRRWSYK DTLPFIFISI 300
  301 LCGCLGSVLI YLNMKFASKT KGFSKISNVF FVIFLSLITS LTAYAILGES ELLFNPMELF 360
  361 PQVINSCSPS SSTVLCETTF WVTAIVLFTS ALLGLLLTSA TFGAAIPTGI IVPSLAIGAC 420
  421 IGRAVGTLLK SRFPSLAGTS IYGVIGSIAF LSSTTRLVVA LVVILFELTG ALNIALPLML 480
  481 ATLISKWVSD SIIETSIYDA WIQFRNIPYF PSSNSLKFSI PLNFPVRSPE QLVRLPIRSC 540
  541 SIEELERAMH DSSQSFFVVL KNDTEFFEGF ISRNKVSELL NRRPMSSNMQ TTDNTGLDPL 600
  601 RSASAPVDST FDLFDYIHPT TFTLNYDTPP VLMLKLFKDA GITNLALLNH GKLHGVLTKI 660
  661 VCFICTI