YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1399.02
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.98
Transmembrane Helix	90	110	0.86
Non-Cytoplasmic	111	126	0.76
Transmembrane Helix	127	148	0.87
Cytoplasmic	149	155	0.87
Transmembrane Helix	156	178	0.90
Non-Cytoplasmic	179	185	0.70
Transmembrane Helix	186	206	0.91
Cytoplasmic	207	214	0.80
Transmembrane Helix	215	237	0.90
Non-Cytoplasmic	238	245	0.81
Transmembrane Helix	246	268	0.91
Cytoplasmic	269	281	0.86
Transmembrane Helix	282	303	0.90
Non-Cytoplasmic	304	309	0.81
Transmembrane Helix	310	332	0.88
Cytoplasmic	333	345	0.78
Transmembrane Helix	346	366	0.88
Non-Cytoplasmic	367	388	0.85
Transmembrane Helix	389	410	0.91
Cytoplasmic	411	419	0.81
Transmembrane Helix	420	439	0.95
Non-Cytoplasmic	440	446	0.81
Transmembrane Helix	447	468	0.79
Cytoplasmic	469	483	0.67
Transmembrane Helix	484	503	0.79
Non-Cytoplasmic	504	544	0.82
Transmembrane Helix	545	565	0.86
Cytoplasmic	566	589	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSTSPNRN LASPKSLQLY TTGSEVAWYP TALDEANEIK SINSKAFSFK NQDQIYGAGS  60
   61 LKSRFSTHEI SSEKNDSPDF TLVLPSNRLY IVIPGLMLSI FLAALDQTVI TTAIPTIVAN 120
  121 LDGGSSYSWI GTAYSLAETS ILPFCGIMSE VVGRKIVLYT SIVLFLFGSA MCGAAQNMLW 180
  181 LVLCRAVQGI GGGGIMSLVT IVIADITPLQ TRPYYTGCMG VTWGVASVMG PLIGGAISQN 240
  241 TTWRWIFFIN LPTGGLSLAL LIFFLNLVPK PTVSFCVFLR DFDFVGIVTI TTGVVLFLLG 300
  301 LNIGSTTGHW AHANVLCYLI FGILCIAGFV VNELYTTRTR IIAPSAFQTL SLSSVMVTSF 360
  361 LHYYIMSTVT YYIPIYFQSI KGDGPLMSGV HTLSLAVVSS VVSAISGMGI GKLKNYRYPM 420
  421 IGGWIVLLAG TGSMIAIYYD TPIPRTMGFL ALTAVGIGNL FQPNLIAIQA SVPPALMATS 480
  481 CSAFMLLRNM GASVGISIGA VIYDQQLTTL LKGTEYSTGL SYSQIASIPS VSERNFVFNV 540
  541 YANAIRTIWI VNCPVAGVGM LLSFFTKQEK LSQSVTEYKE KDKGFKDAP