YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17D4.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.44
Transmembrane Helix	49	70	0.62
Cytoplasmic	71	76	0.58
Transmembrane Helix	77	98	0.89
Non-Cytoplasmic	99	111	0.61
Transmembrane Helix	112	145	0.78
Cytoplasmic	146	161	0.87
Transmembrane Helix	162	182	0.91
Non-Cytoplasmic	183	188	0.76
Transmembrane Helix	189	208	0.96
Cytoplasmic	209	218	0.93
Transmembrane Helix	219	237	0.96
Non-Cytoplasmic	238	245	0.65
Transmembrane Helix	246	265	0.74
Cytoplasmic	266	349	0.66
Transmembrane Helix	350	371	0.91
Non-Cytoplasmic	372	379	0.86
Transmembrane Helix	380	400	0.92
Cytoplasmic	401	418	0.79
Transmembrane Helix	419	440	0.87
Non-Cytoplasmic	441	452	0.85
Transmembrane Helix	453	474	0.92
Cytoplasmic	475	585	0.98
Transmembrane Helix	586	607	0.94
Non-Cytoplasmic	608	616	0.66
Transmembrane Helix	617	635	0.95
Cytoplasmic	636	732	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVNSSAFER TNRFPSFPVL KDDQKTSSDS IAAAKKKDLL SLISSKSLLS SETLGWFSVI  60
   61 CAFSITGSGL EVNTMSIPFY LIFGIFAFVS FTTQYLGIYS FSFQPFQLLN VIIASLSMVF 120
  121 ITLGAFVLGT LDTTCLLLLA FKLFFIRNDP TPFNARSANL KNYIAFPICL FVINHILILL 180
  181 GYFQCSYSVF YASVFYILLG VFIRVFYLVN KEKFEKKELA FLFSSIVVAC LIQFNVLPLG 240
  241 TINLSVTRFT ILCFMQIFCI NWDGIARIQF YLGKFDISLI MALISAIINK TASQNSIKII 300
  301 SCLYQVGFCF FKIGSSITAN LKLPDNSRIY RLYNDFIVNG VLADKESRSI FYFFLLNVSY 360
  361 MFVQVIYGLW TNSLGLISDA IHMAFDCIAI LVGLVATTLA KMPLNYAYPF GFAKIEALSG 420
  421 FTNGIFLVLI SFSIVGEALY RLFHPPQMNT DQLLLVSFLG LVVNLVGILA FNHGHNHDHG 480
  481 SHHHHSHSNH SMCLPNTTND INIFEEFEEE KDNVEAQKMG YTNDDHVSQH EHTHENSQEH 540
  541 HHEHNHNHDH IHKYNEKCDH ESISLQNLDN DHHCHHHHEN HNMHGIFLHI IADTMGSVGV 600
  601 IVSTILIQWF SWTGFDPLAS LIIAALIFVS VLPLIKDSAK NLLSVTDPES EYLLKQCLSN 660
  661 ISLSNSVISL SNPKFWTNER GEVYGILHIQ VSIDGDLNVV RNEVFRKLSI AVPNLKHICI 720
  721 QSERPNNCWC GK