YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC4G9.15
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGEVLANKS CCGAVVTAFS VIGIVFTILK FTSFASFVYK TFFAKGVKLS VYGAKKGYWA  60
   61 VVTGATDGIG KEYATQLAMS GFNVVLISRT QEKLDALAKE LETVAKVKTR TIAIDYTKTT 120
  121 AETFEKLHQD LVGTPITVLI NNVGQSHYMP TSFAETTVKE MDDIMHINCF GTLHTTKAVL 180
  181 SIMLRERQKN EKGPRCLILT MGSFAGLLPS PYLSTYAGSK AFLSNWSASL GEEVKKQGID 240
  241 VWCFNSYLVV SAMSKVRRPT LTIPTPKKFV RAALSSIGLQ RGGTNPYISQ PYPSHAVMSW 300
  301 SLEQLLGSAK GFVVSQVAAM HLSIRKRALR KEARLQAQNQ A

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.44
Transmembrane Helix	11	34	0.73
Cytoplasmic	35	195	0.60
Transmembrane Helix	196	213	0.63
Non-Cytoplasmic	214	305	0.92
Transmembrane Helix	306	324	0.58
Cytoplasmic	325	341	0.63