YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	caf5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.96
Transmembrane Helix	84	104	0.92
Non-Cytoplasmic	105	115	0.79
Transmembrane Helix	116	139	0.86
Cytoplasmic	140	152	0.84
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	181	0.66
Transmembrane Helix	182	203	0.83
Cytoplasmic	204	210	0.72
Transmembrane Helix	211	234	0.88
Non-Cytoplasmic	235	242	0.73
Transmembrane Helix	243	262	0.92
Cytoplasmic	263	318	0.82
Transmembrane Helix	319	338	0.84
Non-Cytoplasmic	339	357	0.68
Transmembrane Helix	358	378	0.96
Cytoplasmic	379	396	0.73
Transmembrane Helix	397	418	0.93
Non-Cytoplasmic	419	425	0.70
Transmembrane Helix	426	448	0.88
Cytoplasmic	449	461	0.64
Transmembrane Helix	462	481	0.70
Non-Cytoplasmic	482	494	0.79
Transmembrane Helix	495	517	0.91
Cytoplasmic	518	531	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLRETVFG ELVEYVSHNS NDNDLEKLRV WKDISKVDSN DSCSSESGDL KIHEVNSEGH  60
   61 IIVRWDDAND PENPLNWPLW AKLVVTFDIC FLTFAVYVGS AIFTPGISEM QETMHVGTVP 120
  121 VVLGLTLFVL GYAIGPLILS PLSEIPQVGR QKIYVLSLLV FVCLQIPTAL GSSLGVLLPM 180
  181 RFLAGFFGSP ALATGGATLA DIWQPWLLPY FMCFWAIGAI GGPVLGPLLG GAMVVAESWR 240
  241 WQFWLLMMIS GFALIVIFFF MPETSEWHIL YKRAKRFRKI TGNENYRTEA ELASSHLSVA 300
  301 QLAKETIIRP IILSISEPIV LSLNIYIGLI YSILYLWFEA FPILFTSVYH FTIIENGLVY 360
  361 LGILVGALIT LACYFVFLYK VMIPAFMASG GDFAPEGVLV ISFPATFFIP ICLFWFGWSG 420
  421 RESVHWIVPI VSTLFYASGA FLMFQSMFQY LAASYPKYVA SVFAGNDLFR SAMAASFPLF 480
  481 ARAMFNNTGP SYAPVAWGST ILGIVACLMI PIPFVLHKWG LKLRSRSKYA S