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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC3D6.13c
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSNTFGSVM RISWVVAFIT MVQTLVSGVP LTDNDLESEV SKGTWFIKYY LPSCGACKRL  60
   61 GPMWDNMVEK AKEQVEGSNF HFGEVDCSKE LSSCANIRAV PTLYLYQNGE IVEEVPFGAS 120
  121 TSEASLLDFV ETHLNPDTDP DIPSDEDVLT DEDTEEVASI QPALSTSVSS LSLASTAMSK 180
  181 SASASEFSGS SVTKASKKLT SSPTSVASKK ATLSSVSKVA STSSLPVTSV SASVDPKSAA 240
  241 SKVQDAEFSI QTAPSFPKEK EEKENTEETE ESKKSINPTG TSKALALDAD IDAALTDKEG 300
  301 WFIQFYSSEC DDCDDVSTAW YAMANRMRGK LNVAHINCAV SKRACKQYSI QYFPTFLFFK 360
  361 EEAFVEYVGL PNEGDLVSFA EEAANFEIRE VELLDTVNAE KNGDVFFLYF YDDDSAEYLN 420
  421 IIRKTGIQLL GHANLYLTTS QQIAKKYRVV SFPKLIVVRD GIASYYPAKM AQDNKDYRRI 480
  481 LGWMKNNWLP VLPELRTSNS KEIFNDESVV LFLLNPELDD FDETKRTAQK IATEFLDEEG 540
  541 RTYQSNWQKE TDKKNSLVNE AEEKNDLEAI EAAKNFHVNG KPSPTRFAWV NGKFWAQWLR 600
  601 KFDIDIEATG PRVIVYNAAQ DIYWDETAKG TPISIEKDTV FDIIKQVETD PDHLKFKILK 660
  661 KNLGVEYLES YGLNIRVLYM VLGIVTVGIL VWYFSGRRAR TLQRRRHSTP ILPVSMRSTG 720
  721 NSGKFD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle