YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pkd2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	169	0.96
Transmembrane Helix	170	193	0.90
Cytoplasmic	194	210	0.80
Transmembrane Helix	211	232	0.85
Non-Cytoplasmic	233	321	0.86
Transmembrane Helix	322	348	0.82
Cytoplasmic	349	374	0.85
Transmembrane Helix	375	396	0.91
Non-Cytoplasmic	397	402	0.85
Transmembrane Helix	403	424	0.93
Cytoplasmic	425	463	0.96
Transmembrane Helix	464	484	0.93
Non-Cytoplasmic	485	494	0.74
Transmembrane Helix	495	515	0.91
Cytoplasmic	516	524	0.79
Transmembrane Helix	525	547	0.92
Non-Cytoplasmic	548	554	0.89
Transmembrane Helix	555	576	0.94
Cytoplasmic	577	710	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLWRSPLLL LVVVVELFSW ADALTRFISA DSLSTCMTDS QLSASKLYAS YFPDNQSVAF  60
   61 DISIQSLVST NVSIDVDISA YGIEIKKVID PCDMEISGFC PMQTGNIALS GSHTLTGEAL 120
  121 SILDSIPSIA YTVPDLDAVV TINIYESDTN TQLACVRTTV QNGRSVYHRA VYWVMCMVIG 180
  181 IPLLIFLLIS PVLQTPALWE IVETMITLFQ FAQIQALYSM MATSLPAIIY SWGRNFMWSM 240
  241 GIIRIGFMQD VFTWYVKSTG GTPSTLVDLG IHANVALAKR GIDLGSLAKR ATTTVTTSTS 300
  301 DSITLRGIKR ISYMMGIETT NFFATGFSFF IILLFFSLLV AMASRFIVEM VLLASRNQAL 360
  361 KKQRIRLYWK SISKGFFYRV IFVGFTQMSV LSMWEIYTRD SSALAFLSMY VIVDMAVLLC 420
  421 YAFVRTIQII RKTGPYSHPD VLYNLYSDTQ HLMRWGFMYV QLDVRFFYFT FPLLLITLVR 480
  481 SMFIGFGQGS PKVQGCAMFG ISVVVFALMV ILRPYATKHM NTLHIGVALM NLISGSFILV 540
  541 MCQAFYVEEL ARQVIGIIFF ALNAITMLLL ILGIFIRTLI VLFRKSGHGT YYRILDDQSE 600
  601 KATSYNKSIK DMSSSDMAFS DPAYSGTTLR SSVDLNTPEY PFSNRNDSDS TFTNNKYVSP 660
  661 WDAIEEASYA NLRGNTDVEQ PFMESDYTRI SENNNNAERR RKPLPNNAFR