YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC4G8.08
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQTLMAAS AGAVASRLLC HPIDTITVHK QTIGKFSFKT MPLKAYYRGL PISLTLITPA  60
   61 TCLYLSTYVE AKRRFKPSVG EGAILYSICG MTAEVVSSFV WTPLEVIKAR TQISQKGSVI 120
  121 NTISTLARSE GLKGFYRGYW MGVAIYLPTT VSWWVCYEES KKYLQKQSNW DISVIAPICS 180
  181 ALGTVVATTI STPLDIVKTR YQVATSSAMR KAEYGLQAEK ELGILEIAKL LFSKHGVKGF 240
  241 TRGLFTRMCY IMPSGMISMS VFESFKSKDI D

Type	Start	End	Confidence
Cytoplasmic	1	45	0.61
Transmembrane Helix	46	68	0.62
Non-Cytoplasmic	69	81	0.53
Transmembrane Helix	82	104	0.66
Cytoplasmic	105	135	0.52
Transmembrane Helix	136	157	0.75
Non-Cytoplasmic	158	171	0.55
Transmembrane Helix	172	192	0.66
Cytoplasmic	193	243	0.55
Transmembrane Helix	244	262	0.37
Non-Cytoplasmic	263	271	0.55