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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: trk2
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSGFSTNG SGSLNTIVCE KLLFKPNFVQ DSFIIGMTIL CSVILYGSGN LRYIDALLLA  60
   61 SGSCTQTGLQ PVDLTQISIY QQLTILLFGV LSTPITVNLG LTLFKLYFYN KRYDMVITNN 120
  121 KLRMTYTYHT VRRRDTPEPS KVGNRKIRVL LDQGNQMHRP VAPETKAEEA EHQENEKHHR 180
  181 HHFRLRKFAN AIDRPSFFRG NTMPALPSYA GVRNSQENED RTEALSPALG KRRMASIDNG 240
  241 SLSVVQNNAR NNPVDFYIPS SFEESSFQTI PEDFEPQVHD HENQTQLNHH LDNNSSISSH 300
  301 NPSLETANDG NQETVSSSNS NYSTTRVDND PHVASYSPQN SNFDHQAAAT TNDAHQNVVR 360
  361 GSAITIAPTP VPRHNRRPIY FADDTNGAEQ EKGAHRLDGR GRKRGKSFAV TPTLHRNERS 420
  421 MSVLPFQLAK SFTSALPRRL TFNRTHTKAS TMSLPYLSYN ATVGRNSAFY ALTPVEREEL 480
  481 AGIEYESLRI LTVILVVYFL FWHILGLVAF LIFIYTAKTS GRVVTDGGIN RGWWAAFTSS 540
  541 SLFDNLGYSL NSDSLNSFQK AIFPQVLGTI LIFLGNTFFP IMLRFIIWIM IRTTRFSPNF 600
  601 QQALYFLFEH PRRSFTLLFP SKTTWVLFLN LTLLNFASFF FFMVLDLGNS YVDKIPVGYR 660
  661 IMNAIFQNAA TRSAGFTVVD LSQIAPAVMV TYMFMMYISA YPIAMSIRQT NVYEERSLGI 720
  721 YAADTENDDD NNINNNNNDN NTPKRKNFLM DHIQRQLSHD LWYLFLGYFI ITIVEGRRLE 780
  781 SEAEPQFTLF AILFEVISGY GTVGLSLGYK NDPSLTAQFR KISKLVMVAL QIRGRHRGLP 840
  841 SALDRAVLMP SDKNFDREEE DYMRRHGKKN TNRADPVPSS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle