YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sod22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.72
Transmembrane Helix	12	32	0.93
Cytoplasmic	33	40	0.57
Transmembrane Helix	41	60	0.75
Non-Cytoplasmic	61	73	0.60
Transmembrane Helix	74	94	0.61
Cytoplasmic	95	102	0.81
Transmembrane Helix	103	125	0.92
Non-Cytoplasmic	126	132	0.80
Transmembrane Helix	133	153	0.92
Cytoplasmic	154	172	0.83
Transmembrane Helix	173	192	0.91
Non-Cytoplasmic	193	203	0.89
Transmembrane Helix	204	226	0.91
Cytoplasmic	227	243	0.94
Transmembrane Helix	244	262	0.96
Non-Cytoplasmic	263	266	0.63
Transmembrane Helix	267	283	0.68
Cytoplasmic	284	294	0.52
Transmembrane Helix	295	314	0.85
Non-Cytoplasmic	315	323	0.57
Transmembrane Helix	324	344	0.90
Cytoplasmic	345	361	0.60
Transmembrane Helix	362	383	0.82
Non-Cytoplasmic	384	410	0.65
Transmembrane Helix	411	436	0.84
Cytoplasmic	437	759	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSQVEISK PHLAYAIIGG FTSLFMLCSL IIKEKLFLGE ATMATATGLI FGPYVAKLFV  60
   61 PTSWGNTDYI TEELARVLLV VEVFAAGAEL PRAYMLRHWR SMFVMLLPVM IFGWLVSTGF 120
  121 MYALIPRLSF LESLAIAACI TATDPVLASS IVGKGKFARR VPGHLRNMLL AESGCNDGMA 180
  181 IPFLYLAIYL IIEKPARHAG RDWVCIIILY ECTFGCVLGA IIGVIARKMI KFSERRGLMD 240
  241 RESFLVFYFV LALFCGGIGT IIGVDDLLVS FCAGAAFSWD SWFSKKTEES HVSNVIDLLL 300
  301 NLSFFVYVGA IMPWPQFHMP HMDLSVWRLV VLAICILIAR RIPAVLLFKS FVPDIINWRE 360
  361 ALFAGHFGPI GVGALYTCLV ARAELEVHST VPEPNDAIEN PEIPNWYCIQ VMWPVVCFLV 420
  421 LSSIIVHGSS IAFFMLGKRI NTLALSFTRT RDSHFAFNLP RVRQGQSLPI KRVDALRSSA 480
  481 NSIASSIRRR HPVNIQEDED ADISTVSLPE AAHLREERAE SPRGGHYDAE EFPSEDYESR 540
  541 QPRRSNEEDR EEEMNPGDET YLIGEDLVVE DSQGNIISHT SSRDANGPSI DEKLAQGDPK 600
  601 AKSFGRKFRS FLRRSYDTFQ RNLHEPDDER QREPTLGHIE SSIENHRPRY SRQNSESHLR 660
  661 ENSVERRRRE QVLTNIGDSE SEDDNIPRPG IVPFYNENNE SSSDTRNGLL SDNVSESRSR 720
  721 RPSRAPSAAV SSEGSPVEED NEAQHRPNIR FLELTRAWE