YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	itr2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.99
Transmembrane Helix	80	101	0.88
Non-Cytoplasmic	102	123	0.84
Transmembrane Helix	124	144	0.94
Cytoplasmic	145	151	0.86
Transmembrane Helix	152	171	0.93
Non-Cytoplasmic	172	180	0.65
Transmembrane Helix	181	199	0.96
Cytoplasmic	200	209	0.84
Transmembrane Helix	210	230	0.93
Non-Cytoplasmic	231	238	0.82
Transmembrane Helix	239	260	0.93
Cytoplasmic	261	336	0.95
Transmembrane Helix	337	357	0.79
Non-Cytoplasmic	358	367	0.76
Transmembrane Helix	368	389	0.94
Cytoplasmic	390	396	0.93
Transmembrane Helix	397	419	0.94
Non-Cytoplasmic	420	432	0.84
Transmembrane Helix	433	453	0.91
Cytoplasmic	454	466	0.86
Transmembrane Helix	467	489	0.88
Non-Cytoplasmic	490	497	0.76
Transmembrane Helix	498	519	0.91
Cytoplasmic	520	557	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFNNIPLAT IKSSDDKGKD FIVEMTTRPS ETKKKVPFSE DMREIPSLPN EEEANATDPQ  60
   61 ANEVADENGE GFEAEKISSW IWVLSAVAGI SGLLFGYDTG VISGALAVLG SDLGHVLSSG 120
  121 QKELITSATS FAALISATTS GWLADWVGRK RLLLCADAIF VIGSVIMAAS RNVAMMVVGR 180
  181 FIVGYGIGLT SLIVPMYITE LAPARLRGRL VIIYVVFITG GQLIAYSLNA AFEHVHQGWR 240
  241 IMFGIGAAPA LGQLISLFWT PESPRYLLRH NHVEKVYKIL SRIHPEAKPA EIAYKVSLIQ 300
  301 EGVKVDFPEG NKFQHFFHSL KVLFTVPSNR RSLFIGCFLQ WFQQFSGTNA IQYFSAIIFQ 360
  361 SVGFKNSISV SIVVGATNFV FTIVAFMFID RIGRRRILLC TSAVMIAGLA LCAIAYHFLP 420
  421 ADTTQNTNSG WQYVVLASII IFLASYASGI GNIPWQQAEL FPMEVRALGA GFSTAINWVG 480
  481 NLIISASFLT MMESITPTGT FALFAGFCFV GLVTSYFTYP ELAGMSIENI HKLLEKGFWQ 540
  541 AVKESTKRVR KGRIDEA