YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	frp1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINSSDKWT VIAICLILGI LLAFILMFWL ERFRVIIKSN AHKHDPSDKR QIWLEKYYLF  60
   61 VRQIYTYLVT HKVILTLIAV PVVFAISIPF IGMQTPASSH GKQTTQVSTG NWSKNAVAAR 120
  121 LGFLACGLYV TSYFFSIKNN PFALLLISSH EKMNYVHRRL SQYAIMIGAI HGFAYIGLAA 180
  181 QGKRALLTAR VTIIGYVILG LMVIMIVSSL PFFRRRFYEW FFVLHHMCSI GFLITIWLHH 240
  241 RRCVVYMKVC VAVYVFDRGC RMLRSFLNRS KFDVVLVEDD LIYMKGPRPK KSFFGLPWGA 300
  301 GNHMYINIPS LSYWQIHPFT IASVPSDDFI ELFVAVRAGF TKRLAKKVSS KSLSDVSDIN 360
  361 ISDEKIEKNG DVGIEVMERH SLSQEDLVFE SSAAKVSVLM DGPYGPVSNP YKDYSYLFLF 420
  421 AGGVGVSYIL PIILDTIKKQ SRTVHITFVW SARSSALLNI VHKSLCEAVR YTEMNINIFC 480
  481 HLTNSYPVEE VSSLNSQSAR NYSLQYLNGR PDVNDYFKDF LHATGTQTAA LASCGSDKLL 540
  541 RHLKSCVNTH SPSTVDLYQH YEEI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.54
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	72	0.53
Transmembrane Helix	73	95	0.86
Cytoplasmic	96	115	0.54
Transmembrane Helix	116	137	0.88
Non-Cytoplasmic	138	159	0.57
Transmembrane Helix	160	180	0.88
Cytoplasmic	181	190	0.49
Transmembrane Helix	191	213	0.88
Non-Cytoplasmic	214	219	0.54
Transmembrane Helix	220	239	0.91
Cytoplasmic	240	293	0.71
Transmembrane Helix	294	313	0.52
Non-Cytoplasmic	314	413	0.68
Transmembrane Helix	414	434	0.73
Cytoplasmic	435	564	0.60