YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fnx1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	55	0.83
Non-Cytoplasmic	56	67	0.76
Transmembrane Helix	68	87	0.86
Cytoplasmic	88	97	0.79
Transmembrane Helix	98	116	0.93
Non-Cytoplasmic	117	124	0.72
Transmembrane Helix	125	148	0.85
Cytoplasmic	149	157	0.86
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	186	0.83
Transmembrane Helix	187	206	0.94
Cytoplasmic	207	224	0.85
Transmembrane Helix	225	244	0.93
Non-Cytoplasmic	245	250	0.80
Transmembrane Helix	251	273	0.92
Cytoplasmic	274	293	0.93
Transmembrane Helix	294	312	0.94
Non-Cytoplasmic	313	331	0.80
Transmembrane Helix	332	351	0.93
Cytoplasmic	352	359	0.86
Transmembrane Helix	360	381	0.92
Non-Cytoplasmic	382	386	0.83
Transmembrane Helix	387	412	0.84
Cytoplasmic	413	428	0.80
Transmembrane Helix	429	448	0.71
Non-Cytoplasmic	449	495	0.76
Transmembrane Helix	496	517	0.91
Cytoplasmic	518	531	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQVNLATE QTSLLYPEVS RKKEELSVNK WTILPALWVG GFLSALDMTI VASLYPVIGS  60
   61 EFKLMNNASY IVTAYLITNT AFQPLYGRLS DIFGRRPTVV FANAAFTLGT FWCGISRSLP 120
  121 ELCMARALAG IGGGGLGTMS SIISSDIVSL RERGTWQGIT NIVWGIGGSL GGPLGGLIAQ 180
  181 RWGWRTAFHF QVPMGILSTI LVAWRVRVKP TVRNSNASLL SRIDYLGSFL LVTGITALVV 240
  241 TFNMGGDAFP WVSPVIITLL VSSVLILFAF YWVEKNIAVE PIAPVEILSQ PTPLNVCLGN 300
  301 FFNAFCSFVI VYELPLFFET TLLMPSSEAG VRIFPYVIST SVGSLCSGLY MKKTGRYRNL 360
  361 VIAGFFFMLM GIVSFAVLTS FGHRTPLILI SLCLAMTGCS YGMNLTSTLI AIISSLAPEE 420
  421 QAVATGLSYL FRATGSVIGI SLSQTTTLSI LMKQLASNLK DDPDKDDLIR RLRESISIIP 480
  481 NLPKDIQKLV IKSYATAFTW TFALVAIIAF AGFWCSLRIK QFYLHTSVDR S