YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1718-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.82
Transmembrane Helix	28	49	0.80
Cytoplasmic	50	237	0.90
Transmembrane Helix	238	260	0.83
Non-Cytoplasmic	261	293	0.81
Transmembrane Helix	294	314	0.94
Cytoplasmic	315	329	0.68
Transmembrane Helix	330	353	0.88
Non-Cytoplasmic	354	359	0.62
Transmembrane Helix	360	380	0.90
Cytoplasmic	381	391	0.77
Transmembrane Helix	392	412	0.86
Non-Cytoplasmic	413	433	0.85
Transmembrane Helix	434	456	0.93
Cytoplasmic	457	912	0.91
Transmembrane Helix	913	933	0.87
Non-Cytoplasmic	934	1085	0.98
Transmembrane Helix	1086	1108	0.93
Cytoplasmic	1109	1129	0.87
Transmembrane Helix	1130	1154	0.84
Non-Cytoplasmic	1155	1169	0.76
Transmembrane Helix	1170	1192	0.90
Cytoplasmic	1193	1201	0.73
Transmembrane Helix	1202	1221	0.92
Non-Cytoplasmic	1222	1298	0.59
Transmembrane Helix	1299	1321	0.88
Cytoplasmic	1322	1713	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVTNWDKF VLLLWKNWTL QWNHKWQMVI ELVLPAIFSL LLVLVRTLVD TEQKGVRYYN  60
   61 EQNLTDLNLL QKNGGFSKFE FILCYSPVNP VLKKLVEEAW QSLGKNKICE SENATQLELD 120
  121 TVSKNAFAGV QFDDAWANLT ENDPLPNDFH FALRFPAELR TATIAIANTW LTMRLFPTID 180
  181 LTGPRNEGDD DGGIPPGYLR EGFLPLQHSL SMAYLRQKSG EQDLPNVVMK RYPFPAYIFD 240
  241 PLLEGMSSIM SLIILLSFIY PCTYITKYIT AEKEKQLKEV MKIMGLSNWL HWTAWFVKSF 300
  301 IMLTISAILI AILVKINWSE DVAVLTHANF TALVFFLIIY IVSSICFCFM MATFFSRAST 360
  361 AAAVTGLIWF IAYIPYSFTI NSYDDLSLSS KLGWSLISNT AMGFGIKLIL GFEGTGEGLQ 420
  421 WSNFFTPVSV DDTLTLGAVM IMMLVSCVIY MIICLYVEQV MPGSFGVPRP WNFPFTREFW 480
  481 CGEREYTGVE DIPNGHVEQR DPKAFETEPE GKHIGLQMRH LKKRFGNKMV VKGLSMNMFE 540
  541 DEITVLLGHN GAGKTTTISM LTGMFPPTSG TAIINGSDIR TNIEGARMSL GICPQHNVLF 600
  601 DEMSVSNHIR FFSRMKGLRG KAVEQEVAKY LKMIELEDKA NVASSKLSGG MKRKLSVCCA 660
  661 LCGDTKVVLC DEPSSGMDPS ARRQLWDLLQ QEKVGRTLLL TTHFMDEADV LGDRIAIMCD 720
  721 GELKCQGTSF FLKKQYGSGY RLVSGVQNLF YGRCTYKTCD SLKICVKRDD CETNEVTALL 780
  781 NKYIPGLKPE CDIGAELSYQ LPDSASAKFE EMFGQLEEQS DELHLNGYGV GITSMEEVFM 840
  841 KVGAEKDNTG NIKDQHEIMN GGSGFRGEDD NESVQSDGIF SENRRLLQGL QLLSNQWKAM 900
  901 LLKKFLYTWR NKLLLLIQNI MPVFFVVVTI LIIKTQGTFQ ELKPITISLT QYPLAVTVLD 960
  961 RSNVQNGTGY EIANKYEDLA RSYGSNYGLE LTGTQGFEDY ILDLGKTIQV RINSRYLVAA1020
 1021 TITESKITAW LNNQALHTAP LTVNMVHNAI ADKLFGSSVK IQVTNAPLPY TTSTLLSQLS1080
 1081 TGNNLGTQLA SNLCFCMCFV SSIYILFLIK ERESRAKLLQ FVGGVKVWTF WLSQFICDFA1140
 1141 SYIVTALIVV ITIVCFQETG LSTFGELGRY YLLLLLFGFA VLPFIYIMSL FFREPATGFA1200
 1201 RVSIVNIFCG MALFIVVVVM SSELFDTKDT ADILGWIFRI FPHFSLAMSL NKVYTNTATR1260
 1261 NACAKAGALP PILLCELVPQ CCNLKPYFAW EEPGVLPETV YMAVTGVVFF LIIIVLEFRL1320
 1321 INELMFKIRQ LISKPPPPPT EGQLDDDVAN ERERILQMSS NELATKNLVL DRVTKYYGQF1380
 1381 MAVNQVSLCV QEVECFGLLG VNGAGKTTTF KMMTGDERIS SGAAYVQGLS LESNMNSIYK1440
 1441 MIGYCPQFDA LLDDLTGREV LRIFCMLRGV QESRIRQLSE DLAKSFGFMK HIDKQTHAYS1500
 1501 GGNKRKLSTA IAVIGSPSVI YLDEPTTGMD PAARRQLWNM VCRIRDSGKS IVLTSHSMEE1560
 1561 CEALCTRLAI MVNGEFKCIG STQHLKNKFS KGLILKIKVR RNLEALRQAR LSGGYARNPD1620
 1621 EQTVPAQMSQ RDIDAVKEFV ETEYPNSILQ EEYQGILTFY IPLTGVKWSR IFGLMESNRD1680
 1681 QLNVEDYSVS QTTLEEIFLE FAKYQREDTR ANQ