YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1494-PA
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	45	0.78
Non-Cytoplasmic	46	271	0.56
Transmembrane Helix	272	294	0.84
Cytoplasmic	295	312	0.41
Transmembrane Helix	313	338	0.72
Non-Cytoplasmic	339	353	0.44
Transmembrane Helix	354	378	0.90
Cytoplasmic	379	382	0.42
Transmembrane Helix	383	404	0.84
Non-Cytoplasmic	405	461	0.67
Transmembrane Helix	462	484	0.88
Cytoplasmic	485	910	0.98
Transmembrane Helix	911	935	0.90
Non-Cytoplasmic	936	1080	0.98
Transmembrane Helix	1081	1104	0.91
Cytoplasmic	1105	1124	0.93
Transmembrane Helix	1125	1150	0.89
Non-Cytoplasmic	1151	1158	0.90
Transmembrane Helix	1159	1181	0.92
Cytoplasmic	1182	1190	0.83
Transmembrane Helix	1191	1211	0.96
Non-Cytoplasmic	1212	1218	0.86
Transmembrane Helix	1219	1240	0.82
Cytoplasmic	1241	1375	0.92
Transmembrane Helix	1376	1396	0.54
Non-Cytoplasmic	1397	1404	0.54
Transmembrane Helix	1405	1426	0.73
Cytoplasmic	1427	1570	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRSYIRKF LLMNWKNHKL QLANPLELLV ILLVPPLFTL VAVLMRFFIP VNHRSDTVYD  60
   61 PIDLDRSWMQ MVEKLEKARQ VADTYNVKGN PFTPHLVIGW APKRYGIFQA MMRRVQKQIE 120
  121 PMTSVGFEDC EEMRESVIEN GLFAGLCFDG SPFVEDQVFE EDTLESYSNI QPMLNYTILL 180
  181 PSELRMLDGD FRMANWMTLY NDDPNTFVLT RLNQPYEGGF VGYVREGFIR LQKSVSESFL 240
  241 VLTSHKSLPT IQIRRFPITG REQDPLMGNL NYGMPFIIII GFLFPAQLFV WQVVSEKQSQ 300
  301 VRQFLINMNI GNLIHFVSWY LKGLIYEMIS SLIIAALLKI RWDQDHGVLT QTPWYILILV 360
  361 LFCYNCAAVA FAIMVAAFFR NALNAVRVLT ILWIMSYVPT FILSNNLEGN IHALRYVSYA 420
  421 LPNVVATLVI EFLIERESIV HITWEDSGYR LNYDGGHITV TASSWIFMLN ALVYCAIGLY 480
  481 VDMWRGGDRS GKKMKKPNTN ASVQEDPYHE RGDSFTHQGQ AIGVNSTKIY EVEPSHRRFK 540
  541 LKIKKLCKRF ATNDRPALNL FSWNVYENEV TVLMGHNGCG KSTLLKILAG LVEPSRGTVM 600
  601 ISSHNIQTER KAASMELGIA FGHDMLLTGF TVIDYLRFIC RVKGLHNNIE IDGQSNYFLN 660
  661 VLQIGGLKTK RIRTLTDRDL CLVSICCAFV GNSPIILIDD VHSDLDKRTQ SLVWNLINEE 720
  721 KSKRTIILVS NSPALAENIA DRMAIMSNGE LKCTGTKPFL KNMYGHGYRL TCVKGKNYKR 780
  781 DELFGMMNSY MPNMSIERDI GYKVTFVLEN KFEDQFPMLI DDLEENMQQL GVVSFRIRDT 840
  841 SMEEIFLRFG CEDNDQSGAF QSHENAQVLL EEYYSTLAEA NEKGRRTGWK LFFLHGRAVI 900
  901 YKRWIAAHRH WIVLIFEVLA MALVAVCTFS SIFIYGKNYE LEPLTFNLSQ LHTVDAFVEL 960
  961 FSEEEDVKDM HAYYTELLYW YDAHVATLTK NRHNAYALLT QNQFTAHVNS RYIFGATFDQ1020
 1021 KIVTAWFNNI PLHSAPYALN VVHNAVARHL FDEEATIDVT LAPLPFRTAI NTFPPSSHTF1080
 1081 GGCLAFGICF VLTFIWPAFA IYMITERGSL LKKQQFLAGV RVCSYWTFTV LYDLLFLLIF1140
 1141 CACVVVMVAL YENPNHDVML YGYISVTLML GGFWVILLAY LMASLCRNPC YGFLWLCGIN1200
 1201 SIGLVCFSQF YRTHPESMLL EPTFMAMYTV ATVICKLFMI YEFKLICMDP VVNFTSVEVF1260
 1261 KSECLSITGA NNSGKTTLLK VVVNETKMNA GQLWIHDYSV NTHRVQCYRM VGYCPQKDSL1320
 1321 PSEFTPRELL YIHAMLQGHR HRIGRELSEA LLRLVGLTPC WNRSVRMCTT GQIRRLYFAY1380
 1381 AVLGSPDLIC VDGVPAGLDP TGKRIILMMT STMQAMGSSF LYTMLTGLDA ERLSLRTPLL1440
 1441 LEGQLWMIRP MDTETENYKS GYQLEVRFKR KVNPNVSMSR ATWNLINHFP MSPNKKFSAF1500
 1501 MEIKFPDAVL TIERDDSMVF VLPLGTTTFS EIFLTLRKDA FEMNIEDYFI TRNMLVGFQI1560
 1561 FTYDQHQDNP