YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Pvf1-PA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSRIRILK PMQHPLLILP VLLLVLIVSE AAAGSLVSPN NRQPSQRFFY AAATSSSSTQ  60
   61 TKVRLLRQAD DPSAAPGALE GSCCQGAAAE AGTPLTLPLS VSAELTNVTA DYDVSGEMPS 120
  121 SKENFKRSIM KSTVRNATPA SCSPQPTIVE LKPPAEDEAN YYYMPACTRI SRCNGCCGST 180
  181 LISCQPTEVE QVQLRVRKVD RAATSGRRPF TIITVEQHTQ CRCDCRTKAE DCNVYQSYRK 240
  241 DLCRCECHNT DARDKCLEQA ENKYWVDDNC TCVCRYNQSC TTGTVFDETQ CKCTDPAAPI 300
  301 DVLDRKRFIV QAVQVDPDNT TLYSV

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	325	0.99