YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309136, mth...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	37	0.86
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	329	0.99
Transmembrane Helix	330	353	0.91
Cytoplasmic	354	361	0.77
Transmembrane Helix	362	381	0.89
Non-Cytoplasmic	382	399	0.85
Transmembrane Helix	400	422	0.91
Cytoplasmic	423	442	0.92
Transmembrane Helix	443	462	0.95
Non-Cytoplasmic	463	490	0.90
Transmembrane Helix	491	512	0.91
Cytoplasmic	513	536	0.84
Transmembrane Helix	537	558	0.88
Non-Cytoplasmic	559	570	0.78
Transmembrane Helix	571	592	0.87
Cytoplasmic	593	676	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSRSSRAA SSNQFIRPCG LLTTVILLQT LVSMSLAIEE MSPPPAAPPR PSPPPTVKLN  60
   61 KCCHSGEYLN DGTCIAGSEA LWLPMVYLVQ QQRFFEPHGA SPRFLKFLPN TRPTCRKDQT 120
  121 TEIFRSRGAN VMLFPNGTLY VRERALMVQP SDYCVDWEVA VVCLNDSQPI NALEDPDYAA 180
  181 NPLVQQEPPK ASLRLSKCCG KWGSYNTQLQ NCDLQPNHQA AVDGLLRLSP QLPEGSYQTS 240
  241 YGLPDCGQPG GYSIAGDWQD AKLDRNTAML QLPHKNLSAG QYCLEHTQRE GEVKIIACQH 300
  301 LFSSAAGAGI HDGSIGGTIE QANGQNLQKA VLTGGILVSI VFLSATLVAG FLLPAVHHAL 360
  361 HWRCQICYVT CLLFGKILLA IEELSSSLQP GSAACHTLAI TMQFFFLAAF FWLNTMCFNI 420
  421 WWTFRDFRPS SLERNQEALR RYLYSLYAWG GPLLITFVAA CVDQLPETTL LRPGFGQLYC 480
  481 WFDNRNLSIF AYFYGPIGLL LCANIALFVS TTHQLTCGLW KRDDVKSSSE KSALGRVCLK 540
  541 LVVVMGVTWI ADILSWLVGG PHGVWFFTDL INALQGVFIF IVVGCQPQVW TACRRIFCPR 600
  601 LRHDITNTTN GVQHSSSSQG LPSMAGGTEI TQNTTTTTTT TNTTATHMPS NPAEDEVPEK 660
  661 APIAPVAPIV KMETIC