YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309614, para-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	147	0.95
Transmembrane Helix	148	172	0.86
Non-Cytoplasmic	173	215	0.87
Transmembrane Helix	216	239	0.85
Cytoplasmic	240	246	0.79
Transmembrane Helix	247	265	0.69
Non-Cytoplasmic	266	273	0.61
Transmembrane Helix	274	297	0.88
Cytoplasmic	298	405	0.75
Transmembrane Helix	406	429	0.90
Non-Cytoplasmic	430	813	0.79
Transmembrane Helix	814	835	0.88
Cytoplasmic	836	852	0.82
Transmembrane Helix	853	872	0.86
Non-Cytoplasmic	873	886	0.80
Transmembrane Helix	887	908	0.88
Cytoplasmic	909	937	0.78
Transmembrane Helix	938	959	0.88
Non-Cytoplasmic	960	983	0.80
Transmembrane Helix	984	1002	0.75
Cytoplasmic	1003	1015	0.66
Transmembrane Helix	1016	1039	0.90
Non-Cytoplasmic	1040	1301	0.85
Transmembrane Helix	1302	1320	0.81
Cytoplasmic	1321	1335	0.80
Transmembrane Helix	1336	1357	0.85
Non-Cytoplasmic	1358	1371	0.77
Transmembrane Helix	1372	1395	0.90
Cytoplasmic	1396	1417	0.89
Transmembrane Helix	1418	1444	0.90
Non-Cytoplasmic	1445	1536	0.78
Transmembrane Helix	1537	1560	0.87
Cytoplasmic	1561	1620	0.64
Transmembrane Helix	1621	1638	0.71
Non-Cytoplasmic	1639	1652	0.65
Transmembrane Helix	1653	1673	0.88
Cytoplasmic	1674	1681	0.75
Transmembrane Helix	1682	1703	0.90
Non-Cytoplasmic	1704	1746	0.77
Transmembrane Helix	1747	1770	0.88
Cytoplasmic	1771	1786	0.73
Transmembrane Helix	1787	1801	0.43
Non-Cytoplasmic	1802	1834	0.48
Transmembrane Helix	1835	1857	0.88
Cytoplasmic	1858	2131	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDSDSISE EERSLFRPFT RESLVQIEQR IAAEHEKQKE LERKRAEGEV PQYGRKKKQK  60
   61 EIRYDDEDED EGPQPDPTLE QGVPIPVRLQ GSFPPELAST PLEDIDPYYS NVLTFVVVSK 120
  121 GKDIFRFSAS KAMWMLDPFN PIRRVAIYIL VHPLFSLFII TTILVNCILM IMPTTPTVES 180
  181 TEVIFTGIYT FESAVKVMAR GFILCPFTYL RDAWNWLDFV VIALAYVTMG IDLGNLAALR 240
  241 TFRVLRALKT VAIVPGLKTI VGAVIESVKN LRDVIILTMF SLSVFALMGL QIYMGVLTQK 300
  301 CIKKFPLDGS WGNLTDENWD YHNRNSSNWY SEDEGISFPL CGNISGAGQC DDDYVCLQGF 360
  361 GPNPNYGYTS FDSFGWAFLS AFRLMTQDFW EDLYQLVLRA AGPWHMLFFI VIIFLGSFYL 420
  421 VNLILAIVAM SYDELQKKAE EEEAAEEEAI REAEEAAAAK AAKLEERANA QAQAAADAAA 480
  481 AEEAALHPEM AKSPTYSCIS YELFVGGEKG NDDNNKEKMS IRSVEVESES VSVIQRQPAP 540
  541 TTAHQATKVR KVSTTSLSLP GSPFNIRRGS RSSHKYTIRN GRGRFGIPGS DRKPLVLSTY 600
  601 QDAQQHLPYA DDSNAVTPMS EENGAIIVPV YYGNLGSRHS SYTSHQSRIS YTSHGDLLGG 660
  661 MAVMGVSTMT KESKLRNRNT RNQSVGATNG GTTCLDTNHK LDHRDYEIGL ECTDEAGKIK 720
  721 HHDNPFIEPV QTQTVVDMKD VMVLNDIIEQ AAGRHSRASD RGVSVYYFPT EDDDEDGPTF 780
  781 KDKALEVILK GIDVFCVWDC CWVWLKFQEW VSLIVFDPFV ELFITLCIVV NTMFMAMDHH 840
  841 DMNKEMERVL KSGNYFFTAT FAIEATMKLM AMSPKYYFQE GWNIFDFIIV ALSLLELGLE 900
  901 GVQGLSVLRS FRLLRVFKLA KSWPTLNLLI SIMGRTMGAL GNLTFVLCII IFIFAVMGMQ 960
  961 LFGKNYHDHK DRFPDGDLPR WNFTDFMHSF MIVFRVLCGE WIESMWDCMY VGDVSCIPFF1020
 1021 LATVVIGNLV VLNLFLALLL SNFGSSSLSA PTADNDTNKI AEAFNRIGRF KSWVKRNIAD1080
 1081 CFKLIRNKLT NQISDQPSGE RTNQISWIWS EGKGVCRCIS AEHGDNELEL GHDEILADGL1140
 1141 IKKGIKEQTQ LEVAIGDGME FTIHGDMKNN KPKKSKYLNN ATDDDTASIN SYGSHKNRPF1200
 1201 KDESHKGSAE TMEGEEKRDA SKEDLGLDEE LDEEGECEEG PLDGDIIIHA HDEDILDEYP1260
 1261 ADCCPDSYYK KFPILAGDDD SPFWQGWGNL RLKTFQLIEN KYFETAVITM ILMSSLALAL1320
 1321 EDVHLPQRPI LQDILYYMDR IFTVIFFLEM LIKWLALGFK VYFTNAWCWL DFVIVMVSLI1380
 1381 NFVASLVGAG GIQAFKTMRT LRALRPLRAM SRMQGMRVVV NALVQAIPSI FNVLLVCLIF1440
 1441 WLIFAIMGVQ LFAGKYFKCE DMNGTKLSHE IIPNRNACES ENYTWVNSAM NFDHVGNAYL1500
 1501 CLFQVATFKG WIQIMNDAID SREVDKQPIR ETNIYMYLYF VFFIIFGSFF TLNLFIGVII1560
 1561 DNFNEQKKKA GGSLEMFMTE DQKKYYNAMK KMGSKKPLKA IPRPRWRPQA IVFEIVTDKK1620
 1621 FDIIIMLFIG LNMFTMTLDR YDASDTYNAV LDYLNAIFVV IFSSECLLKI FALRYHYFIE1680
 1681 PWNLFDVVVV ILSILGLVLS DIIEKYFVSP TLLRVVRVAK VGRVLRLVKG AKGIRTLLFA1740
 1741 LAMSLPALFN ICLLLFLVMF IFAIFGMSFF MHVKEKSGIN DVYNFKTFGQ SMILLFQMST1800
 1801 SAGWDGVLDA IINEEACDPP DNDKGYPGNC GSATVGITFL LSYLVISFLI VINMYIAVIL1860
 1861 ENYSQATEDV QEGLTDDDYD MYYEIWQQFD PEGTQYIRYD QLSEFLDVLE PPLQIHKPNK1920
 1921 YKIISMDIPI CRGDLMYCVD ILDALTKDFF ARKGNPIEET GEIGEIAARP DTEGYEPVSS1980
 1981 TLWRQREEYC ARLIQHAWRK HKARGEGGGS FEPDTDHGDG GDPDAGDPAP DEATDGDAPA2040
 2041 GGDGSVNGTA EGAADADESN VNSPGEDAAA AAAAAAAAAA AGTTTAGSPG AGSAGRQTAV2100
 2101 LVESDGFVTK NGHKVVIHSR SPSITSRTAD V