YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ost48-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWKALLIAV LAIAHCQAVL ETDANTLVLL DNLAIRETHS IFFKSLQDRG FKLTYKLADD  60
   61 SSLLLSKYGE YLYKNVIIFA PSVEEFGGDV SVERLAQFVD DGGNVLVAGS EKSGDALREF 120
  121 ASECGFELDE ENAAVIDHLH YDVSDAGEHT TILTSAKNLI QADTIVGKAN RQADAAPLLY 180
  181 RGTGLIADKE NPLVLKLLTA ESTAYSYNPE ASVSDYPHAV GRGTLLIAAL QARNNARVVF 240
  241 SGSLLFFSDE SFTTAVQYAQ SGVFHKLAGN RDVAESISKW VFGETGRLRV ASVQHHKEGE 300
  301 LLPPDQAYTI TDPVVYTIGI EELVQGEWRA FKASDIQLEF VRIDPFVRTY LKQTNTGAYQ 360
  361 AKFKIPDVYG VYQFKVDYNR VGYTHLYSTT QVSVRPLEHT QYERFIPSAF PYYTSAFSMM 420
  421 IGVFVFSFVF LHFKDEPVGR AAKEDKKSQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	409	0.99
Transmembrane Helix	410	433	0.90
Cytoplasmic	434	449	0.98