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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: iav-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLLKKCLR KKAPEMKPGA ILDAVISQSS ATACKCLLYK LADYKRGGDL IDAINSGGLI  60
   61 AVEQLIREQF GVFMYNDGKG QVINRAEFLR WKYRDHTEVT IPIEASLSIH DPLGKWEDHK 120
  121 ACWQMQYRGA LGESLLHVLI ICDSKVHTKL ARVLLRVFPN LALDVMEGEE YLGASALHLS 180
  181 IAYSNNELVA DLIEAGADIH QRAIGSFFLP RDQQRANPAK STDYEGLAYM GEYPLAWAAC 240
  241 CANESVYNLL VDCGSDPDAQ DSFGNMILHM VVVCDKLDMF GYALRHPKTP AKNGIVNQTG 300
  301 LTPLTLACKL GRAEVFREML ELSAREFWRY SNITCSGYPL NALDTLLPDG RTNWNSALFI 360
  361 ILNGTKPEHL DMLDGGIIQR LLEEKWKTFA QNQFLKRLLI LSTHLLCLSV SVYLRPAHDG 420
  421 EAEDEDSEGS DASAAALLDI QSDEGDSGGG DYNAQTVARY CAEFATLVGV LSYVIFQQGD 480
  481 EIKNQGLSAF LKQLSHAPAK AIFLFSNLLI LACIPFRLIG DTDTEEAILI FAVPGSWFLL 540
  541 MFFAGAIRLT GPFVTMIYSM ITGDMFTFGI IYCIVLCGFS QAFYFLYKGH PQVQSTMFNT 600
  601 YTSTWMALFQ TTLGDYNYPD LNQTTYPNLS KTVFVIFMIF VPILLLNMLI AMMGNTYVTV 660
  661 IEQSEKEWMK QWAKIVVTLE RAVPQADAKG YLEAYSIPLG PSDDSGFEVR GVMVIKSKSK 720
  721 TRAKQRKGAV SNWKRVGRVT LTALKKRGMT GEEMRRLMWG RASISSPVKV TKQKLKDPYN 780
  781 LHTDSDFTNA MDMLTFASNP ASSNGVTLRS VTAPPPAPPA PDPFRELIMM SDQRPETHDP 840
  841 HYFAGLQQLA NKAFDLVEQT MKTQPQAPVA KKVDPLPVAS VAKASPAAPA TQATATAAAA 900
  901 SDLMAMPLPI SNLSNLFQDP KDIVDPKKLE EFMAMLAEVE TEESDSGGPI LGKLSLAKRT 960
  961 HNALSKAEIR RDQQGFEGHS HGQFQPMSSV WAPPGLDVDT GFHFDEAVAE EVLTIEQEAE1020
 1021 VETEDGNGGQ DSEDIPTAEE VHATMKQFHL RKCQPAQDEA ARRAKSARVR RRNKVSPEQS1080
 1081 DDPDERSQRG RSAYTRRTQS PPDPLEPWST RELQDINKIL ARK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle