YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG11340-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLGIFVLI SYLGLSSAAG VHLGDLQQNL AANGSVVVSP LNTTDAFSVS INLSQSTVNN  60
   61 CPSLKNAESM ALMELLTRLT APCRYDRMVP PVVHNKDGEE VPMDIYARFY IYVMKNLDSS 120
  121 DLQFTVQGLL QLRYLDPRLA FSSYLPNRRQ PIMGESELKK MLWVPHIFLT NEQASTVLGT 180
  181 SAKDELTSIY PNGTVLTSTR LQATLYCWMN FQKFPFDEQK CKTTLESWMY NTTLVQLHWE 240
  241 TDNPVSFDKQ LQLTEYNLIG SLYNESIRVS NESYMSHGSL EGNYSIISFT VLLTREVGYY 300
  301 VIDYFLPSIM IVTISWVSFW LQADQTPART TLGCTTLLSF ITLSLSQENN LMKVSYVTMS 360
  361 EVWFLVCTIF IFGSLVEFAF VNTIWRRNND LQLKKRTTKY IVKSTFVPHL KKHRRHGYRR 420
  421 TDSTMSTMST TSMDKTCGPN NTVITIETPI IIGGSLSRED SAISLDEQDE TSTSESSDSS 480
  481 KEKPAQTFAT MTPKEVSLWI DRKMRFVFPL SFIVFNALFW TLVYCL

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	297	0.98
Transmembrane Helix	298	320	0.89
Cytoplasmic	321	327	0.80
Transmembrane Helix	328	346	0.86
Non-Cytoplasmic	347	361	0.87
Transmembrane Helix	362	385	0.90
Cytoplasmic	386	505	0.98
Transmembrane Helix	506	524	0.95
Non-Cytoplasmic	525	526	0.87