YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14508-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.45
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKFRSLNS KLFQLAMSGI QRTSVRPRIS FPGRGSGFTG NRKLLGALGA LTGTAGLLIY  60
   61 ALETSVDASS DCVHPAHQHW NHKGLLSALD KESVRRGYTV YKEVCSSCHS LQYMAYRNLV 120
  121 GVCMTEAEAK AEAEAITVRD GPNEEGEYYE RPGKLSDHFP SPYANEEAAR SANNGSYPPD 180
  181 LSYIVSARKG GEDYVFSLLT GYCDPPAGFA LRDGLYFNPY FSGGAIAMGK VVDNEVVSFE 240
  241 DPNVPASAAQ IAKDVCVFLK WTSEPETDER RLLLIKVTLI STFLIGISYY IKRFKWSTLK 300
  301 SRKIFFIPEL EAQAKREAEE AAKAARKAKE QECNKCENQN EKKD

Type	Start	End	Confidence
Signal Peptide	1	61	0.55
N-region	1	52
H-region	53	58
C-region	59	61
Cleavage Site	61	62
Non-Cytoplasmic	62	271	0.97
Transmembrane Helix	272	292	0.73
Cytoplasmic	293	344	0.75