YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vha100-1-PG
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.73
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	420	0.95
Transmembrane Helix	421	443	0.92
Cytoplasmic	444	462	0.87
Transmembrane Helix	463	483	0.89
Non-Cytoplasmic	484	552	0.73
Transmembrane Helix	553	574	0.88
Cytoplasmic	575	585	0.46
Transmembrane Helix	586	609	0.84
Non-Cytoplasmic	610	656	0.70
Transmembrane Helix	657	676	0.94
Cytoplasmic	677	750	0.92
Transmembrane Helix	751	772	0.78
Non-Cytoplasmic	773	781	0.72
Transmembrane Helix	782	806	0.83
Cytoplasmic	807	850	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEM ALCQLFLQSE AAYACVSELG ELGLVQFRDL NPDVNAFQRK FVNEVRRCDE  60
   61 MERKLRYLEK EIKKDGIPML DTGESPEAPQ PREMIDLEAT FEKLENELRE VNQNAEALKR 120
  121 NFLELTELKH ILRKTQVFFD EQEGGVNQTT ESMTRALITD EARTAGASMG PVQLGYMEKS 180
  181 NEREDYLPCF VAGVILRERL PAFERMLWRA CRGNVFLRQA MIETPLEDPT NGDQVHKSVF 240
  241 IIFFQGDQLK TRVKKICEGF RATLYPCPEA PADRREMAMG VMTRIEDLNT VLGQTQDHRH 300
  301 RVLVAAAKNL KNWFVKVRKI KAIYHTLNLF NLDVTQKCLI AECWVPLLDI ETIQLALRRG 360
  361 TERSGSSVPP ILNRMQTFEN PPTYNRTNKF TKAFQALIDA YGVASYREMN PAPYTIITFP 420
  421 FLFAVMFGDL GHGAIMALFG LWMIRKEKGL AAQKTDNEIW NIFFGGRYII FLMGVFSMYT 480
  481 GLIYNDIFSK SLNIFGSHWH LSYNKSTVME NKFLQLSPKG DYEGAPYPFG MDPIWQVAGA 540
  541 NKIIFHNAYK MKISIIFGVI HMIFGVVMSW HNHTYFRNRI SLLYEFIPQL VFLLLLFFYM 600
  601 VLLMFIKWIK FAATNDKPYS EACAPSILIT FIDMVLFNTP KPPPENCETY MFMGQHFIQV 660
  661 LFVLVAVGCI PVMLLAKPLL IMQARKQANV QPIAGATSDA EAGGVSNSGS HGGGGGHEEE 720
  721 EELSEIFIHQ SIHTIEYVLG SVSHTASYLR LWALSLAHAQ LAEVLWTMVL SIGLKQEGPV 780
  781 GGIVLTCVFA FWAILTVGIL VLMEGLSAFL HTLRLHWVEF QSKFYKGQGY AFQPFSFDAI 840
  841 IENGAAAAEE