YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0307388, Vha...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.72
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	406	0.92
Transmembrane Helix	407	429	0.91
Cytoplasmic	430	448	0.83
Transmembrane Helix	449	469	0.88
Non-Cytoplasmic	470	538	0.70
Transmembrane Helix	539	560	0.88
Cytoplasmic	561	571	0.44
Transmembrane Helix	572	595	0.84
Non-Cytoplasmic	596	642	0.68
Transmembrane Helix	643	662	0.94
Cytoplasmic	663	736	0.92
Transmembrane Helix	737	758	0.78
Non-Cytoplasmic	759	767	0.72
Transmembrane Helix	768	792	0.83
Cytoplasmic	793	836	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEM ALCQLFLQSE AAYACVSELG ELGLVQFRDL NPDVNAFQRK FVNEVRRCDE  60
   61 MERKLRYLEK EIKKDGIPML DTGESPEAPQ PREMIDLEAT FEKLENELRE VNQNAEALKR 120
  121 NFLELTELKH ILRKTQVFFD EQEGGVNQTT ESMTRALITD EARTAGASMG PVQLGFVAGV 180
  181 ILRERLPAFE RMLWRACRGN VFLRQAMIET PLEDPTNGDQ VHKSVFIIFF QGDQLKTRVK 240
  241 KICEGFRATL YPCPEAPADR REMAMGVMTR IEDLNTVLGQ TQDHRHRVLV AAAKNLKNWF 300
  301 VKVRKIKAIY HTLNLFNLDV TQKCLIAECW VPLLDIETIQ LALRRGTERS GSSVPPILNR 360
  361 MQTFENPPTY NRTNKFTKAF QALIDAYGVA SYREMNPAPY TIITFPFLFA VMFGDLGHGA 420
  421 IMALFGLWMI RKEKGLAAQK TDNEIWNIFF GGRYIIFLMG VFSMYTGLIY NDIFSKSLNI 480
  481 FGSHWHLSYN KSTVMENKFL QLSPKGDYEG APYPFGMDPI WQVAGANKII FHNAYKMKIS 540
  541 IIFGVIHMIF GVVMSWHNHT YFRNRISLLY EFIPQLVFLL LLFFYMVLLM FIKWIKFAAT 600
  601 NDKPYSEACA PSILITFIDM VLFNTPKPPP ENCETYMFMG QHFIQVLFVL VAVGCIPVML 660
  661 LAKPLLIMQA RKQANVQPIA GATSDAEAGG VSNSGSHGGG GGHEEEEELS EIFIHQSIHT 720
  721 IEYVLGSVSH TASYLRLWAL SLAHAQLAEV LWTMVLSIGL KQEGPVGGIV LTCVFAFWAI 780
  781 LTVGILVLME GLSAFLHTLR LHWVEFQSKF YKGQGYAFQP FSFDAIIENG AAAAEE