YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	beta4GalNAcTB-PA
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVRLWVRSF HKYDLLIAIG LITLIVYLCL PFRFASHYDY IEESKIEGAL VPQVTRNVSQ  60
   61 QEVFECTYSE IIAENRFVYH LAHYHDAVQR GAEIRPGGEF RPEGCQARYS TAIIVPYRQR 120
  121 EEQLHAFLTY MHNYLPQQLI HYRIFLVEQF DHKPFNRAML FNIGAQVAAE YGFPCLILHD 180
  181 VDLLPLNSGQ IYACSERPRH MSSALDHWRF RLPYRGLFGG VVAINTAQYQ QINGMSNLYY 240
  241 GWGGEDDDLY ERLQALNIDI CRFAMEFSKY TMLKHKQEQP NANRVALLRS ATLRQHADGL 300
  301 NSLVYTEMER RMHSLFTHIL VDT

Type	Start	End	Confidence
Cytoplasmic	1	12	0.64
Transmembrane Helix	13	35	0.68
Non-Cytoplasmic	36	323	0.92