YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23172248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNAEPLTL SRDVKRSIEL LEKLQASGDF PTTKLAALQK VLNSDFMTSV REVYEHVYET  60
   61 VDIQGSHDVR ASATAKATVA AFAASEGHAH PRVVELPKTE EGKTRPYELR IEGIPLYHKT 120
  121 NTLIVKVYRP RIYVSIIHLI WKALSIFNFC FSGLGFNVMG GKEQNSPIYI SRIIPGGVAD 180
  181 RHGGLKRGDQ LLSVNGVVRE NHEKAVELLK QAVGSVKLVV RYTPKVLEEM EMRFDKQRNT 240
  241 RRRQ

Type	Start	End	Confidence
Cytoplasmic	1	138	0.58
Transmembrane Helix	139	159	0.60
Non-Cytoplasmic	160	244	0.93