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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Calx-PA, Calx-PC...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLKSIFT CALFVIFVYA TAQSLLKVQE TEARQAYLNV TSSSSSNLSQ DDGHFLSRRL  60
   61 RQVSHGEEGD EGAPSQMDDE LEQMTKVHGE APDAEELREC SEGLVLPLWM PQRNISVGDR 120
  121 LVRGFVYFVL LIYLFVGVSI IADRFMAAIE AITSIERAVV VKGPNNTKQV MHVRIWNETV 180
  181 ANLTLMALGS SAPEILLSVI EIYAKDFESG DLGPGTIVGS AAYNLFMIIA VCMIWIPAGE 240
  241 VRRIRHLRVF FVTALFSVFA YVWLWLILSV FTPGVILVWE AIVTLLFFPL TVLWAYIAER 300
  301 RLLVYKYMDK NYRVNKRGTV VAGEHDQVEM DAEKGPKQPM VTSARGNDAE AFDEARREYI 360
  361 TLLTELRQKY PDADLEQLEM MAQEQVLARS SKSRAFYRIQ ATRKMVGSGN LMRKIQERAH 420
  421 SDLTEVKAQL HAGDDEEADD PIRMYFEPGH YTVMENCGEF EVRVVRRGDI STYASVEYET 480
  481 QDGTASAGTD FVGRKGLLSF PPGVDEQRFR IEVIDDDVFE EDECFYIRLF NPSEGVKLAV 540
  541 PMIATVMILD DDHAGIFAFT DSVFEITESV GRFELKVMRY SGARGTVIVP YWTENDTATE 600
  601 SKDYEGARGE LVFENNESEK FIDLFILEES SYEKDVSFKV HIGEPRLAPD DELAAKIKEV 660
  661 EKKPVQDLTE LDRILLLSKP RNGELTTAYV RIRESQEFKA TVDKLVAKAN VSAVLGTSSW 720
  721 KEQFKDALTV IPADESEFDN DDEEEEVPSC FSYVSHFVCL FWKVLFAFVP PTDICGGYVT 780
  781 FVVSIFVIGV ITAIIGDAAS YFGCALNIKD SVTAILFVAL GTSIPDTFAS MIAAKHDEGA 840
  841 DNCIGNVTGS NAVNVFLGIG LAWTIAAVYH SSHGMTFNVE PGTIGFAVAL FCGEALIAIM 900
  901 LIMFRRWHKG IGAELGGPKV SKYISAAILV FLWVFYVVIC ILEAYDVIRV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle